PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG183000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 389aa    MW: 42488 Da    PI: 8.9473
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG183000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.35.3e-16318361548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++Lkk+
  Pavir.2NG183000.1.p 318 RRQKRMIKNRESAARSRARKQAYTNELENKVSHLEEENERLKKQ 361
                          69***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-12314382IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.622316361IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.94E-12318363No hitNo description
CDDcd147072.46E-26318363No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-15318362No hitNo description
PfamPF001705.2E-14318361IPR004827Basic-leucine zipper domain
PROSITE patternPS000360321336IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPAHSLPFLS AVRNRTPKPL TYANCIRIRP CILPTDFDFL QKLLGVHVYA HILYWVRPWF  60
MIQAMASQAG GGRGGDAGSA QHGQVQGLAR QGSLYNLTLD EVQNHLGEPL LSMNFDELLK  120
SVLPDGVDPN GTVTGKPDTA SSLQRQGSIM MPPQLSKKTV DEVWKGIQDG PGTSATDGGR  180
HRRERQPTLG EMTLEEFLVK AGVVSEGLMK DSDDLPSNMN TFGSNVVAGG GSGLNSGAQW  240
LQQYQQQALE SRQPSLVGSY MASQLSPQPL SVATGAMLDS IYSDGQITSP TVGAFSDPQT  300
PGRKRGALGE VVDKVIERRQ KRMIKNRESA ARSRARKQAY TNELENKVSH LEEENERLKK  360
QKEFDEILSS ALPPEPKYQL RRTSSAAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203400.0callus| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG183000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808689.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
SwissprotQ9LES32e-80AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2T7ECB10.0A0A2T7ECB1_9POAL; Uncharacterized protein
STRINGPavir.J34085.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27073883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.16e-79ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]