PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG167700.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 551aa    MW: 59180.5 Da    PI: 6.5125
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG167700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.35.9e-11141197155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Pavir.2NG167700.3.p 141 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 197
                          57*******************4444.2455535555.779999**************98 PP
2AP247.15.9e-15240291155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.2NG167700.3.p 240 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 291
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-14141207IPR016177DNA-binding domain
PfamPF008472.6E-8141197IPR001471AP2/ERF domain
CDDcd000182.19E-17141207No hitNo description
SMARTSM003801.5E-22142211IPR001471AP2/ERF domain
PROSITE profilePS5103217.122142205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-11142207IPR001471AP2/ERF domain
PRINTSPR003672.5E-6143154IPR001471AP2/ERF domain
PfamPF008477.3E-10240291IPR001471AP2/ERF domain
CDDcd000182.17E-23240301No hitNo description
SuperFamilySSF541717.85E-18240301IPR016177DNA-binding domain
SMARTSM003801.5E-33241305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18241300IPR001471AP2/ERF domain
PROSITE profilePS5103219.045241299IPR001471AP2/ERF domain
PRINTSPR003672.5E-6281301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGAAAAD DILPPLPPPR GDEAAAEPKL EDFLGLQEPA AGVAGRAPFA  60
GSGGGASSIG LSMIKNWLRS QPAPGPAGAD SMALAVVEEA STDEVRKVTD DRGAESVAAV  120
VDAAQQRKAV AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQGGYDK  180
EEKAARAYDL AALKYWGTTT TTNFPMSNYE KELEEMKHMS RQEYVASLRR KSSGFSRGAS  240
IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM  300
SRYDVKSIME SSALPVGGTT KCLKDVHDQS DMGMNSSGAD SASHMTATTK LLTDGIGSYG  360
NENYGYSGWS PSAMMRIPLQ FSNGQEHSRL WCKPEQDSAV VAAAHNLQHL QHFPSPGGTH  420
DFFHPSHVQD VTGVADVSSP SVDPNSFLYN GVVGYHGSMG GGYAMPVATL VDSNHATSSY  480
GVEEGTSELY SGQNLYYLSQ ASPGANTGKA DAYEQQGVGY ESWVPSVPVI SQKDPNVTVC  540
HGTPLFSVWK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58750.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG167700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-128BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2T7CM500.0A0A2T7CM50_9POAL; Uncharacterized protein
STRINGPavir.Hb01059.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-119AP2 family protein