PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG167700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 554aa    MW: 59555.9 Da    PI: 6.5124
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG167700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.6e-14141200155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pavir.2NG167700.1.p 141 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 200
                          57*******************666664478446*************************98 PP
2AP247.15.9e-15243294155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.2NG167700.1.p 243 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 294
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-20141210No hitNo description
SuperFamilySSF541714.9E-17141210IPR016177DNA-binding domain
PfamPF008473.0E-11141200IPR001471AP2/ERF domain
PROSITE profilePS5103218.966142208IPR001471AP2/ERF domain
SMARTSM003802.7E-29142214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-15142210IPR001471AP2/ERF domain
PRINTSPR003672.5E-6143154IPR001471AP2/ERF domain
PfamPF008477.3E-10243294IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18243304IPR016177DNA-binding domain
CDDcd000182.06E-23243304No hitNo description
SMARTSM003801.5E-33244308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18244303IPR001471AP2/ERF domain
PROSITE profilePS5103219.045244302IPR001471AP2/ERF domain
PRINTSPR003672.5E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGAAAAD DILPPLPPPR GDEAAAEPKL EDFLGLQEPA AGVAGRAPFA  60
GSGGGASSIG LSMIKNWLRS QPAPGPAGAD SMALAVVEEA STDEVRKVTD DRGAESVAAV  120
VDAAQQRKAV AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG  180
YDKEEKAARA YDLAALKYWG TTTTTNFPMS NYEKELEEMK HMSRQEYVAS LRRKSSGFSR  240
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  300
FDMSRYDVKS IMESSALPVG GTTKCLKDVH DQSDMGMNSS GADSASHMTA TTKLLTDGIG  360
SYGNENYGYS GWSPSAMMRI PLQFSNGQEH SRLWCKPEQD SAVVAAAHNL QHLQHFPSPG  420
GTHDFFHPSH VQDVTGVADV SSPSVDPNSF LYNGVVGYHG SMGGGYAMPV ATLVDSNHAT  480
SSYGVEEGTS ELYSGQNLYY LSQASPGANT GKADAYEQQG VGYESWVPSV PVISQKDPNV  540
TVCHGTPLFS VWK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.58750.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG167700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2T7CM500.0A0A2T7CM50_9POAL; Uncharacterized protein
STRINGPavir.Hb01059.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-123AP2 family protein