PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG159500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 494aa    MW: 51153 Da    PI: 9.1178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG159500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-057294123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k F r  nL+ H r H
  Pavir.2NG159500.1.p 72 FVCEVCHKGFQREKNLQLHRRGH 94
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.37E-671144No hitNo description
Gene3DG3DSA:3.30.160.606.4E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.6797294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAAASSAFFF GLGDMQMQPQ GSTPVQNSVA ALGAAAPPPP PPKKKRNPPG NPKPDAEVIA  60
LSPRTLMATN RFVCEVCHKG FQREKNLQLH RRGHNLPWKL KQKDPKEARP RIKKHYCRKH  120
GEKTLKCGKC DKLYAVEADW KAHSNTCGTR EYRCDACGEL SSPVWKGTYD AHRSFCNMAP  180
RESAEMTHMG ADDLDVGSGS ISLGLSGAAT QIHGLADQYD RIMLRSQAPS SSSFFPGSGA  240
LSPAQDFSED GEYSQAGQGL CLLHGKSPFP GMMQLPEQQQ PGSSNANGNL LNLGYFSGIG  300
NDGGSETGQD ARRLVTQDQF NGSGGGSNSD HGGVMAPVGS HGRRLISGGF PSLYNSSPSA  360
APPQHSATAL LMKAAQMGST SSADNGPSTL LRAAGFGAAS RGQGTSRSAA AEAMSSHAAH  420
FHDLIMNSLA GGGGGGGGGG SFSSGAAGFG AMDDGNMSTR DFLGGGTGAA MAPSSGRLRV  480
GGAPDRTRPT QTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16121193372Zinc finger protein JACKDAW
5b3h_F1e-16121193372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45242e-48callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG159500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548653e-72AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957598.11e-179protein indeterminate-domain 5, chloroplastic
RefseqXP_004957599.11e-179protein indeterminate-domain 5, chloroplastic
RefseqXP_004957600.11e-179protein indeterminate-domain 5, chloroplastic
TrEMBLK3ZSG01e-178K3ZSG0_SETIT; Uncharacterized protein
STRINGPavir.Ba01139.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-55indeterminate(ID)-domain 12