![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG159300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 350aa MW: 36679.2 Da PI: 6.3669 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG159300.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Pvi&pid=Pavir.2NG159300.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 26.9 | 8.6e-09 | 165 | 212 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq
Pavir.2NG159300.1.p 165 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 212
8*************************9....677*****************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MDSDYVASLL MGHSAAPGLD FAALDGGFLD ALCGAGAGLF GAPGVAAGAG GGGSPEGSSV 60 SDPAWARARD SGNARKRKAP PAGTANGKEA CLGKAGEPKG PDGKKARVGA GGSPVKPKVE 120 EATASDGSVE DKGQKKGKGK SAKPPVEPPK DYVHVRARRG QATDSHSLAE RVRREKISQR 180 MKFLQDLVPG CNKVVGKALM LDEIINYVQS LQQQVEFLSM KLATVNPQLD FSNLSTLLHK 240 DMYQACGPSV NSVFPLESAG AAFPFCNQAD LFQSFGSGAM EDQCSLSLLD TALPHTTNPQ 300 FAFQKQQRDF WEDGLQNALP IVSEQGQENV VSAPSFDGQL QADQTKIEF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |