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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.2NG147200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WRKY |
Protein Properties |
Length: 328aa MW: 35279.3 Da PI: 6.1149 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG147200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 81.3 | 1e-25 | 161 | 218 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58
D ++WrKYGqK++kgs++pr+YY+C+s C+++k vers p v+++tY eH h
Pavir.2NG147200.1.p 161 TDLWAWRKYGQKPIKGSPHPRGYYKCSSLkACMARKLVERSPAKPGVLVVTYIAEHCH 218
699************************9989*************************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MECSNNDWDL QAVVRSCGTG TAACNGSGGS SEAPPPEEEA RRRIHVGRVA AAAPEFLVGR 60 PVRPAAALRD LDYLGLDHEL PRAPFSITPS PSSERGAPLD HEVLISFPSA STSGQGQQLL 120 QPRKQPGRKP GVRTPRPKRS KKSQLKKVVC EVPVADGGVS TDLWAWRKYG QKPIKGSPHP 180 RGYYKCSSLK ACMARKLVER SPAKPGVLVV TYIAEHCHVV PTMLNALAGT TRHRPASPDD 240 GGRQASHGAS DEASGSGRRE EDSADASSMT ADGGGAETAD DENEPWQVDM AALDEYPLDD 300 FLKPFDDDFV DRFFEDDDGV LERRVSL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111416 | 5e-91 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. |
GenBank | AY870601 | 5e-91 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |