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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG136300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 487aa MW: 50985 Da PI: 6.3919 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 291 | 338 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pavir.2NG136300.1.p 291 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 338 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.33E-10 | 285 | 342 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-16 | 285 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.256 | 287 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 289 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-6 | 291 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-10 | 293 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MNCGPPDQLP PASAPAPSCF LNLNWDQSMA AAAAGDHLDP ALSSMVSSPA SNSTAAAATD 60 GLALHGISPQ PQYGGTPLSS PPKLNLSMMG QFHHYQAPQV GGGGPGGLPI LENLMPMGHL 120 DQFLADPGFA ERAARLSGFD GRPGGSGYGG AVPGQFGLPD AGPVGALKEL ELGSGRDESS 180 VSDPASASAE MALKGPSDGN AKKRKASGKG KGKDGPGSTA AKDPAKEESS GKRCKSADES 240 NGAEDNSGKG KAAQSNSENG GKKQVKDSSK PPEPPQDYIH VRARRGEATD SHSLAERVRR 300 EKISQRMKLL QDLVPGCNKV VGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPQLDFNNL 360 PNLLPKDIHQ SCGPMQNLHF PLETSGAPLP YLNQSHQGSP LGCSLTNGMD NQSNMHPLDP 420 AFCRQMNSQH PFLNGVSDVA SQVGTFWQDD LQSVVHMDIG QGQEIAATSS NSYNGSLQTV 480 HMKMEL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2042 | 0.0 | callus| leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG136300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971039.1 | 0.0 | transcription factor bHLH77 | ||||
TrEMBL | A0A2T7DCJ5 | 0.0 | A0A2T7DCJ5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03809.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG136300.1.p |