PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG126700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 381aa MW: 39377.1 Da PI: 6.8665 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 75.5 | 7e-24 | 257 | 319 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+ Pavir.2NG126700.1.p 257 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 319 89*********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16596 | 6.0E-7 | 125 | 234 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.7E-17 | 252 | 316 | No hit | No description |
SMART | SM00338 | 3.2E-22 | 257 | 321 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.9E-21 | 257 | 319 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.185 | 259 | 322 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.31E-11 | 260 | 315 | No hit | No description |
CDD | cd14702 | 8.71E-22 | 262 | 313 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 264 | 279 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MASSSDEQPK PPEPPAAAVV ATAAPPQTHA EWAASLQAYY AAAGHPYAWP AQHLLAAAAA 60 GAPFGTPVPF PVYHPGAAAA YYAHASMAAG VPYPTAEAAA AAAAAAATAT EGKGKGKGRG 120 ASPEKGSSGA PSGEDASRSG DSDESSGTRD DDTDHKDSSA SKKRKSGNTS AEGEPSQAAV 180 VRYAAVESPY PAVKGRSASK LPVSAPGRAA LPNATPNLNI GMDFWSASPA LAVPAVQGEA 240 DPGLALARRD SVTQLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK VADLTTENSA 300 LRAELDNLKK ACQDMEAENS RLLGGMADSQ GPSVTTTLGM SIDPPKVQHH DDEGQLHKNT 360 SNNSNGNYAG ASHKQEANTR * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 273 | 279 | RRSRLRK |
2 | 273 | 280 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.28356 | 0.0 | callus| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG126700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970243 | 0.0 | EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955801.1 | 0.0 | DNA-binding protein EMBP-1 | ||||
Swissprot | P25032 | 4e-66 | EMBP1_WHEAT; DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A3L6T6W4 | 0.0 | A0A3L6T6W4_PANMI; DNA-binding protein EMBP-1-like | ||||
STRING | Pavir.Ba03287.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-23 | basic region/leucine zipper transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG126700.1.p |