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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG126700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 381aa MW: 39377.1 Da PI: 6.8665 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG126700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 75.5 | 7e-24 | 257 | 319 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
Pavir.2NG126700.1.p 257 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 319
89*********************************************************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MASSSDEQPK PPEPPAAAVV ATAAPPQTHA EWAASLQAYY AAAGHPYAWP AQHLLAAAAA 60 GAPFGTPVPF PVYHPGAAAA YYAHASMAAG VPYPTAEAAA AAAAAAATAT EGKGKGKGRG 120 ASPEKGSSGA PSGEDASRSG DSDESSGTRD DDTDHKDSSA SKKRKSGNTS AEGEPSQAAV 180 VRYAAVESPY PAVKGRSASK LPVSAPGRAA LPNATPNLNI GMDFWSASPA LAVPAVQGEA 240 DPGLALARRD SVTQLDEREL KRERRKQSNR ESARRSRLRK QQECEELARK VADLTTENSA 300 LRAELDNLKK ACQDMEAENS RLLGGMADSQ GPSVTTTLGM SIDPPKVQHH DDEGQLHKNT 360 SNNSNGNYAG ASHKQEANTR *
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 273 | 279 | RRSRLRK |
2 | 273 | 280 | RRSRLRKQ |
Functional Description ? help
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Source |
Description |
UniProt | Interacts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU970243 | 0.0 | EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G35530.1 | 3e-23 | basic region/leucine zipper transcription factor 16 |