 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2NG100300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
ERF |
| Protein Properties |
Length: 218aa MW: 23568.2 Da PI: 7.1985 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2NG100300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 60 | 5.6e-19 | 56 | 105 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+++ V++++ +g+W+AeIr p + kr++lg+f+taeeAa+a++ a+++l+g
Pavir.2NG100300.1.p 56 RFRCVHRRP-WGKWAAEIRGP-----NlhKRVWLGTFDTAEEAAAAYDSAALRLRG 105
699******.**********9.....445*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 218 aa
Download sequence Send
to blast |
MMDATRFLDA DHHHHKHTGL GKMNTTVARD HHPTMDKQRT PSGEGLPHGT GTGHRRFRCV 60
HRRPWGKWAA EIRGPNLHKR VWLGTFDTAE EAAAAYDSAA LRLRGRRAVT NFPPPSCISV 120
SATSSAVMSE TSTSSAPPSD RPVMTSQGRP ESPMASPPSP QSSVGDDATG SLWFHREPLE 180
FIDFSLPATA PAGSRHCDFG DLGDLDDLFS TPDLLAP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5wx9_A | 5e-21 | 49 | 113 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
