PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Pavir.2NG058300.4.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 797aa MW: 88728.6 Da PI: 7.9115

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG058300.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.6	4.1e-18	119	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ evGF +r +++k+ +++t+++ vCs+ g++e+ +++ ++rtgCka++k+++++d+ w++ ++ eH+H+l+ Pavir.2NG058300.4.p 119 EFYNLYSWEVGFGIRWGRNRKN-AAKSVTRQEIVCSCVGNPEKANSS---------TQRTGCKAMIKLHRSNDNGWHIGEFIAEHTHPLT 198 6*****************99.6667********99987655.........99****************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-14	119	198	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-25	321	412	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.939	605	641	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MSQHRIRTRF QVISWGPAVV AGGAGSEAVQ GSGPACGGAG TVLAHDGGAQ SGGAVGGAAQ 60 ACGWVRRPRF GSIPDERTPK PGRVSAYEQT LRNYAEKKSG VVINPAAGTS FDSRAEAYEF 120 YNLYSWEVGF GIRWGRNRKN AAKSVTRQEI VCSCVGNPEK ANSSTQRTGC KAMIKLHRSN 180 DNGWHIGEFI AEHTHPLTGA CSEKSEWPSH KHLDPYTKNL VLHLRNNNMD LSKINGIIAS 240 FFGAMENVLF NKRALKSLCA RISKENSDDD VCKALELFHS FRRDDPSFMY SVEVDNESRI 300 KTLLWTNGCS RMKYAHFGDS ITFDTTYRTT LYDMPFGLFV GTNNHYQSVI LGGVLMRYET 360 EESFKWVFNE FVTLMGGKAP CTILTDQCHE MELAITEVLP DTTHRWCKLH VLRREDECLG 420 PIYLKNPGFK DDFHKVIDAM LLTVAEFESA WQHLLEKYNL HGDAFLTQIY DSRHRWAKPY 480 FKEKFCGKQT SMQKRETVNH MLKGYVPPDS SIYMFVQQYN QLQSDLESKE SFEESRSKKK 540 SRVLSKGVPI EEHAAKVYTR AMFEKFGEII FESGSYVVDE MEKGKAYVAR HIRSDRRETW 600 SQVEFQVMIR AEDGTVVCEC GLGEHMGMSC CHAVKVMTHL GMQEIPAGNI AKRWTRSARD 660 IAPDHLAEYP KDMTPGMQQA YRYSALYAAA MELVDLGASS DDAFAIATAA LAQAKLKILE 720 AGKSKDGARS AEQPTHSAAS AQGSDAQDMS AVTMDDTIFA AGGGRLGMKA APGRKRKLLQ 780 HFPAEEVSQP TVAAHI*

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MSQHRIRTRF QVISWGPAVV AGGAGSEAVQ GSGPACGGAG TVLAHDGGAQ SGGAVGGAAQ  60
ACGWVRRPRF GSIPDERTPK PGRVSAYEQT LRNYAEKKSG VVINPAAGTS FDSRAEAYEF  120
YNLYSWEVGF GIRWGRNRKN AAKSVTRQEI VCSCVGNPEK ANSSTQRTGC KAMIKLHRSN  180
DNGWHIGEFI AEHTHPLTGA CSEKSEWPSH KHLDPYTKNL VLHLRNNNMD LSKINGIIAS  240
FFGAMENVLF NKRALKSLCA RISKENSDDD VCKALELFHS FRRDDPSFMY SVEVDNESRI  300
KTLLWTNGCS RMKYAHFGDS ITFDTTYRTT LYDMPFGLFV GTNNHYQSVI LGGVLMRYET  360
EESFKWVFNE FVTLMGGKAP CTILTDQCHE MELAITEVLP DTTHRWCKLH VLRREDECLG  420
PIYLKNPGFK DDFHKVIDAM LLTVAEFESA WQHLLEKYNL HGDAFLTQIY DSRHRWAKPY  480
FKEKFCGKQT SMQKRETVNH MLKGYVPPDS SIYMFVQQYN QLQSDLESKE SFEESRSKKK  540
SRVLSKGVPI EEHAAKVYTR AMFEKFGEII FESGSYVVDE MEKGKAYVAR HIRSDRRETW  600
SQVEFQVMIR AEDGTVVCEC GLGEHMGMSC CHAVKVMTHL GMQEIPAGNI AKRWTRSARD  660
IAPDHLAEYP KDMTPGMQQA YRYSALYAAA MELVDLGASS DDAFAIATAA LAQAKLKILE  720
AGKSKDGARS AEQPTHSAAS AQGSDAQDMS AVTMDDTIFA AGGGRLGMKA APGRKRKLLQ  780
HFPAEEVSQP TVAAHI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG058300.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459424.2	0.0	protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A2T7ELG9	0.0	A0A2T7ELG9_9POAL; Uncharacterized protein
STRING	Pavir.Ba03654.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-75	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.2NG058300.4.p