PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2NG027300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 212aa MW: 21897.7 Da PI: 11.0834 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 5.8e-11 | 88 | 135 | 1 | 48 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e++l+r +rk++NRe+ArrsR+R++++ eeLe+ +++L a+ +aL+ + Pavir.2NG027300.1.p 88 EERLRRLKRKISNRESARRSRARRRQRAEELERAAAALRAQGRALAAR 135 789**************************************9999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-7 | 86 | 135 | No hit | No description |
SMART | SM00338 | 9.9E-7 | 88 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.6E-8 | 88 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.76 | 90 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.89E-6 | 92 | 137 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 95 | 110 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLSLDEAMQL DFAGALPDMD VGSGFGFDFD LDLDLGFDTT TSGAGRGGFD FDHMATFDAT 60 MKCGAAASTG TGTTSPANAG IGADDDAEER LRRLKRKISN RESARRSRAR RRQRAEELER 120 AAAALRAQGR ALAARRDAAA ARALAVRLDN ARLGAEAGAL RRRLGEAQRQ AVLLLALARA 180 RLAAAARGPG AVGVVAPPQL AAGGAAGMMT S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2NG027300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665488.1 | 1e-18 | ocs element-binding factor 1-like | ||||
TrEMBL | A0A1E5VU06 | 2e-41 | A0A1E5VU06_9POAL; Uncharacterized protein | ||||
STRING | Si032429m | 6e-33 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16831 | 9 | 9 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2NG027300.1.p |