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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2NG010900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 438aa MW: 49979.5 Da PI: 6.2327 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2NG010900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.7 | 2.4e-17 | 134 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEd +lv++v+q+G W+ Ia++++ +R +kqc++rw+++l
Pavir.2NG010900.1.p 134 KGQWTPEEDRKLVKLVEQFGLMKWSYIAQMLP-RRVGKQCRERWHNHL 180
799******************9**********.*************97 PP
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2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 188 | 228 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W+ eEd l++a+k+ G++ W Ia++++ gRt++++k++w+
Pavir.2NG010900.1.p 188 IWSDEEDMVLIQAHKEVGNK-WVEIAKRLP-GRTENSIKNHWN 228
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 438 aa
Download sequence Send
to blast |
MDFSCFQPHT GICNYLQFDS YMQENGHCYE LHPVDHPFEA IGDYRSGSML PSATFNDLQY 60 SAERGTKKPI FDHAASIDRI RTVESQLHLL TPKTEVSHLT ENGLVSYKAC ETNGRFVPRK 120 ETYSISLKRA NVVKGQWTPE EDRKLVKLVE QFGLMKWSYI AQMLPRRVGK QCRERWHNHL 180 RLNIKKDIWS DEEDMVLIQA HKEVGNKWVE IAKRLPGRTE NSIKNHWNAT KRRQFARRRS 240 HTSSKQGPKS GTLLQNYIKC LGIGPSKNVV APLAPPTLSP SSSVPATPRE GPAKMIDERL 300 EYNNPSNILD SQGILSIHEQ NYSKAQSCEE HAVAPICDDF SIDMLCDTLF HTKEDSCFQV 360 YTVDDDMDMN CIFNHVDHAI KVNCEIDMEM MWDDEDGLGC VEEPAGSPQI EDVHVKEEMD 420 LIEMVTVTQK YGKAEKN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC243252 | 1e-40 | AC243252.2 Panicum virgatum clone PV_ABa094-H10, complete sequence. |