PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG006100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 287aa    MW: 31588.5 Da    PI: 7.9581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156486123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Pavir.2NG006100.1.p 64 YTCTFCRREFRSAQALGGHMNVH 86
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-66191No hitNo description
SMARTSM003550.00666486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEQMAKYYWA MLGASRTATA AATSSGLRSW PPPAHAGEPS WEELAFAQDA AGHLGGCVWP  60
PRSYTCTFCR REFRSAQALG GHMNVHRRDR ARLRQCASPD HEVIQDTQKQ QSSIASPPAD  120
HQLQLQPQPE SPLFRPKQQA VLISGPKSTF SDHQSCNKEG AVISTTTSPS FLSTIIKEST  180
NKVVISVPAA TAGSKQAIEI DDDDDEEEEE EIVAERRRKR RRRVVHQQPE ALLPLFFLRS  240
SKGVEHDAKV PQVITRPSPN SSSLHLAGRQ EVDLELRLGS SIPKVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135986229superman protein
2l1o_A3e-135986229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222RRKRRRR
2217221RKRRR
3218223KRRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.151230.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG006100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730832e-77EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803719.11e-114transcriptional regulator SUPERMAN-like
TrEMBLA0A1E5VNC01e-130A0A1E5VNC0_9POAL; Uncharacterized protein
STRINGPavir.J10005.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-29zinc-finger protein 10