PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG586900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 371aa    MW: 37847.8 Da    PI: 7.4994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG586900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.31.5e-23128190159
                          ---SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg +WrKYGqK++++s+ +prsYYrCt++   gC+++++v+ s+++p+ ++i Y g+H+++
  Pavir.2KG586900.1.p 128 LDDGNSWRKYGQKHIQDSPnNPRSYYRCTHKpdqGCRATRQVQASDDNPSEFVISYYGQHTCR 190
                          58***************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-25116192IPR003657WRKY domain
SuperFamilySSF1182906.93E-23122192IPR003657WRKY domain
PROSITE profilePS5081119.99123192IPR003657WRKY domain
SMARTSM007749.7E-33128191IPR003657WRKY domain
PfamPF031061.4E-22129190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAAYSASGGG RSSPPPAAAA PRAVVDNLID LRERAEMLRN MLQGSPTPPG TPADAAPAGT  60
SDLIDGIMSS LSSALSAALD TTAAGGRGQG RRRRRAGAAT GSGPQRRSST TRRRSHSPFL  120
RTVTTKTLDD GNSWRKYGQK HIQDSPNNPR SYYRCTHKPD QGCRATRQVQ ASDDNPSEFV  180
ISYYGQHTCR DPSTIPLVIE AAAAPPDDCA NLISFGSSSI TATATTLGLG GASTLAAVVP  240
PQQPQAVPSD PTTTTMFISG MVGYSSSSLP AAQLQDYYRC GSEEAHRHSS ISSPPAAVGS  300
AAAGIIMTSS ATVGSAPAEY WPGGGGTLGD MACGGGHGAA GSFPSSPSSL GLLTGSFGSF  360
GDDDMFGFDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-25122190269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG586900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586330.0KU058633.1 UNVERIFIED: Panicum miliaceum WRKY31-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802431.11e-155uncharacterized protein LOC112881781
TrEMBLA0A3L6QUJ91e-154A0A3L6QUJ9_PANMI; Putative WRKY transcription factor 38
STRINGPavir.Ba00227.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-20WRKY DNA-binding protein 46