PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG557900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 550aa    MW: 57436.9 Da    PI: 6.6437
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG557900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.31.7e-561495362374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl.. 83 
                          ++lL  cA a+++g+l +aq+lL  l elas +g+p++Rlaa+ + AL++rl +  ++  ++++++ + +  +     ++ +l+  +l  
  Pavir.2KG557900.1.p 149 EQLLNPCAVAIEAGNLPRAQHLLYVLGELASFSGEPNHRLAAHGLLALKQRLPHaVGPAAAATVRMPPCECPTpvfsgVDPRLFRASLir 238
                          689*************************************************99666666666655444433345665555555555589 PP

                 GRAS  84 fsevsPilkfshltaNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp..egpp..slRiTgvgspesg...skee 157
                          f+evsP++ + + +aN aI +a++           +++H++D ++s+G+QWp+Ll+aL+  p  + pp   l++ g +++ +     +  
  Pavir.2KG557900.1.p 239 FNEVSPWFAVPNALANAAIAQAAAAMgarpaaephRQIHVVDVGVSHGVQWPTLLEALTRVPrgSTPPavCLKVGGPAAAPPApfsASPP 328
                          ********************99876555677777799**********************7665466774568888877655557788899 PP

                 GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                +L ++A+++++++ ++   a  +++l      + pgE+l+V+l+++l +        ++e+ +vL+ +++l+P+++v++e ++d
  Pavir.2KG557900.1.p 329 GYDCSPQLLRYAKTINLDLAIEQ--APCTDSL-HG--TLTPGETLVVCLQFRLGHAT------ADEQVAVLRNIRRLNPELLVLAELDLD 407
                          99********************8..3444444.33..4699**********999987......333468*******************88 PP

                 GRAS 248 h...nsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                          +   +++s + +f+  le+ ++++ds+ +a  +r+++er+++E+e  g ++   v    a         e Wr+rl +aGF++++++ +a
  Pavir.2KG557900.1.p 408 CggrSDGSVASEFAARLEHLWMFLDSTaAAFKGRDADERRVMEAE-AGTALAATVPRGAAV----DGGREAWRARLAAAGFEEAAFGGEA 492
                          84234569*******************555556677999999999.777777777666665....777889******************* PP

                 GRAS 334 akqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsvSaWr 374
                          +++ak+llrk++  g+++     + g++v l Wk++p+ ++S Wr
  Pavir.2KG557900.1.p 493 VETAKALLRKYD-GGWELVppsPSAGAAVgLRWKGQPVSFCSLWR 536
                          ************.66777755455778888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.634122513IPR005202Transcription factor GRAS
PfamPF035146.0E-54149536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MSNERGDQEP AAATSSGASD WLDESIAFLA ADLDVGLGAY GWLQGSVEEQ QQGIDSMVAE  60
TRLPPTTTLS TQSGLGPVTT SVASSAAASP REFGQPRKRK SPQHSSQHCP VGGGPELDSG  120
GTSSNRKPSK KGSAKAGAAS LGRDARWAEQ LLNPCAVAIE AGNLPRAQHL LYVLGELASF  180
SGEPNHRLAA HGLLALKQRL PHAVGPAAAA TVRMPPCECP TPVFSGVDPR LFRASLIRFN  240
EVSPWFAVPN ALANAAIAQA AAAMGARPAA EPHRQIHVVD VGVSHGVQWP TLLEALTRVP  300
RGSTPPAVCL KVGGPAAAPP APFSASPPGY DCSPQLLRYA KTINLDLAIE QAPCTDSLHG  360
TLTPGETLVV CLQFRLGHAT ADEQVAVLRN IRRLNPELLV LAELDLDCGG RSDGSVASEF  420
AARLEHLWMF LDSTAAAFKG RDADERRVME AEAGTALAAT VPRGAAVDGG REAWRARLAA  480
AGFEEAAFGG EAVETAKALL RKYDGGWELV PPSPSAGAAV GLRWKGQPVS FCSLWRPAQA  540
SPELIWRGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-2714453783474Protein SHORT-ROOT
5b3h_B3e-2714453729420Protein SHORT-ROOT
5b3h_E3e-2714453729420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG557900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A2S3H4830.0A0A2S3H483_9POAL; Uncharacterized protein
STRINGPavir.J40211.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-76GRAS family protein