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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2KG535600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
GeBP |
Protein Properties |
Length: 479aa MW: 52171 Da PI: 7.2544 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG535600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 109.9 | 1.8e-34 | 78 | 177 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87
lfqrlw+eeDeiv+L+G+ +f+a +g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg +sf+++h+q
Pavir.2KG535600.1.p 78 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMHRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQA 167
79************************99877778***************************************8999************* PP
DUF573 88 ifelskkiWg 97
ife+++ iW+
Pavir.2KG535600.1.p 168 IFEIARNIWR 177
*********7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MPPTGDDPSA AAGISFPDVG GGDSEDADFA GAHLLDPTDP SLPNPTASSA TGLPHAVPAG 60 GSGGGPVTSG NGGERRPLFQ RLWTEEDEIV ILRGFAEFTA ARGTAFASHQ YDTDPFYEDM 120 HRRLQLDFSK SQLVEKLRRL KRKYRNCVSR LRESGATFSF RSPHEQAIFE IARNIWRPTN 180 KHGRDPSADS DDEDAAVNTS PNGEVKSPSS GRQRRRRRAT DFAAPAGNAP ATSMVQPPQP 240 VQLQPVSVPV KMEDSLPALP QNPMPVTVTM DGSEPLRLPV MSPQSGVSDA EKSCLTPLLK 300 EMMRAVINVG TNPFGAKLSE PPLGLPMEGE KWRKQRILEL EVYLKRIELL QDQAKVEAVS 360 PSQPCDSNTL RNAVNNSQGC SPKISVNLFL HSSGVIAAKF QYNQLLVDAF RKIPKASWNV 420 KERIPTDVES KFMPFQREGI RFVLQHGGRA LIADEMGLGK TLQAIAVASC LHDFCQFL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT041652 | 0.0 | BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds. |
GenBank | EU969972 | 0.0 | EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds. |
GenBank | JX428455 | 0.0 | JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds. |
GenBank | KJ726797 | 0.0 | KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G28040.1 | 1e-40 | DNA-binding storekeeper protein-related transcriptional regulator |