PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG524700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 442aa    MW: 46935.2 Da    PI: 6.3985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG524700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000391636323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ CgksFs   +L  H+r+H
  Pavir.2KG524700.1.p 16 CKVCGKSFSIGRSLGGHMRSH 36
                         *******************99 PP
2zf-C2H221.94.6e-07102122323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  Cgk Fs++ +L rH+r+H
  Pavir.2KG524700.1.p 102 CRECGKLFSSWRSLFRHMRSH 122
                          ********************9 PP
3zf-C2H216.23.1e-05292314123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp Cgk+Fs+   L  H  +H
  Pavir.2KG524700.1.p 292 YECPGCGKVFSSYQALGGHRASH 314
                          99***********9999998887 PP
4zf-C2H211.10.0012378400123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + Cp C ++Fs+   L  H  +H
  Pavir.2KG524700.1.p 378 FACPVCFRVFSSGQALSEHKGSH 400
                          78*****************8666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.361436IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-81437IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4081436IPR007087Zinc finger, C2H2
SuperFamilySSF576674.12E-101436No hitNo description
Gene3DG3DSA:3.30.160.603.7E-41436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576674.12E-1095122No hitNo description
PROSITE profilePS5015711.011100127IPR007087Zinc finger, C2H2
SMARTSM003550.0028100122IPR015880Zinc finger, C2H2-like
PfamPF138944.6E-4101122No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5102122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.06E-6291314No hitNo description
PfamPF139121.1E-11291316IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-4291315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616292319IPR007087Zinc finger, C2H2
SMARTSM003550.031292314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
SuperFamilySSF576674.06E-6373400No hitNo description
PROSITE profilePS501579.203378400IPR007087Zinc finger, C2H2
SMARTSM003550.084378400IPR015880Zinc finger, C2H2-like
PfamPF139128.5E-6378400IPR007087Zinc finger, C2H2
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDAMEMELAA AVRHGCKVCG KSFSIGRSLG GHMRSHLPLG EAAAEGDAAE ELARAAANGG  60
RIPNGVVGYG LRENPRKTRR LSDFADEEDG GDGDGDGEHK ACRECGKLFS SWRSLFRHMR  120
SHASGGRDRD DEEDVDVEEE FVPEEAEEAE MVVPTVEAPL LEPAAVTALA AAPRRRRRSM  180
RVAAPPPARP PVLCGFEKEP EDVALCLLML SRDTGLWSSP SPVKEERYDG ARNRAGLPRS  240
GHAHKYNPDD ASTLLQHGGD AKIKGRVPNP KGRKRSSPKQ QRDAVAPKRT RYECPGCGKV  300
FSSYQALGGH RASHKRINTS CSAPKAAAAA AASPAQEPST ETYASFSTLS PSASPDSVAI  360
GFGKLDARAA AEAAAEKFAC PVCFRVFSSG QALSEHKGSH LMPADSGELY AGEAEQDQEQ  420
HSAAAAGFLD LNFPPASPEE A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG524700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038401e-52AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039151e-52AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149631e-52AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800381.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6TCN70.0A0A3L6TCN7_PANMI; Uncharacterized protein
STRINGPavir.J10663.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-15C2H2-like zinc finger protein