PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG516900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 270aa    MW: 29823.9 Da    PI: 4.5903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG516900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS193.11.8e-591266123373
                 GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEa 201
                          +Q p+L++ LasR+egpp lR+T+ + + s        ++ e+g +L +fA++ +++++f+v+        ++ +++l++++L ++  Ea
  Pavir.2KG516900.1.p   1 MQIPTLIDMLASRSEGPPILRLTVADVAPSApppaLDMSYDELGAKLINFARSRNMSMDFRVVttspadaFTSLVDQLRVQQLVLDGTEA 90 
                          7***********************98866667877778899**********************666655445556677888888888*** PP

                 GRAS 202 laVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                          l+Vn+++ lh+++de++ + s       r+ +Lk +++l P++vvvve++ad ++++ + r+  a+++ +  +d++++ lp+ se+r+++
  Pavir.2KG516900.1.p  91 LVVNCHMLLHTVPDETAGSVSlaqpvsLRTMLLKSLRTLDPNLVVVVEEDADFTAGDVVGRLRAAFNFLWIPYDAVDTFLPKGSEQRRWY 180
                          *************998777666657767999*********************************************************** PP

                 GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          E+e +g++++nv+a+eg +r+er+e  ++W +r+++aGF++v+++e+aa ++k++l++++  g+ ++ e++ lvl+Wk++++v++SaW
  Pavir.2KG516900.1.p 181 EAE-IGWKVENVLAQEGVDRVERQEDRARWDQRMRSAGFRAVAFGEEAAGEVKAMLNEHA-AGWGMKREDDDLVLTWKGHNVVFASAW 266
                          ***.********************************************************.889999********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.1E-571266IPR005202Transcription factor GRAS
PROSITE profilePS5098530.6891248IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQIPTLIDML ASRSEGPPIL RLTVADVAPS APPPALDMSY DELGAKLINF ARSRNMSMDF  60
RVVTTSPADA FTSLVDQLRV QQLVLDGTEA LVVNCHMLLH TVPDETAGSV SLAQPVSLRT  120
MLLKSLRTLD PNLVVVVEED ADFTAGDVVG RLRAAFNFLW IPYDAVDTFL PKGSEQRRWY  180
EAEIGWKVEN VLAQEGVDRV ERQEDRARWD QRMRSAGFRA VAFGEEAAGE VKAMLNEHAA  240
GWGMKREDDD LVLTWKGHNV VFASAWAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-262269212475Protein SHORT-ROOT
5b3h_B3e-262269158421Protein SHORT-ROOT
5b3h_E3e-262269158421Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG516900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803436.10.0scarecrow-like protein 32
SwissprotQ9SN221e-100SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2T7EY270.0A0A2T7EY27_9POAL; Uncharacterized protein
TrEMBLA0A3L6TA250.0A0A3L6TA25_PANMI; Transcription factor containing protein, GRAS family
STRINGPavir.J04428.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.14e-86GRAS family protein