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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2KG505200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 312aa MW: 33304 Da PI: 6.5156 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG505200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g
Pavir.2KG505200.1.p 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 99
79********.7*********32...35***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MELNFQSQPS VFQLEDYSSC CYYYYQQEAA AQAKPSKPRG RKKGSNNHSK FVGVRQRPSG 60 RWVAEIKDTT QKIRMWLGTF ETAEAAAKAY DEAARLLRGN EARTNFAPRI SPDCPLAVRI 120 RGLLQHKKIK KAKAAAARSS SAAAAAASKQ KAASSPSPTT SDSNSNSHST NSACGGPSSS 180 SSSSSSAVSC EDAMAMLNGG GGALDGGEVY RQEFAPVGAE EFDSWVFDSA FGQFPALDGF 240 AAVESAVPAA LAEEEPAAAA AQGEMAEFER IKVERRISAS LYAMNGLQEY FDRVFDASAC 300 DPFWDISPLC H*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT040415 | 1e-158 | BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds. |
GenBank | JX469953 | 1e-158 | JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds. |