PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 419aa MW: 44184.4 Da PI: 8.7061

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG494200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.1	3.5e-53	32	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Pavir.2KG494200.1.p 32 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 120 79**************************.88***********8888899******************************* PP NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Pavir.2KG494200.1.p 121 PILAYtgSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 160 998777888***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-63	28	197	IPR003441	NAC domain
PROSITE profile	PS51005	61.421	32	197	IPR003441	NAC domain
Pfam	PF02365	6.4E-28	33	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MRSMESTDSS SGSAPPRRRQ QQQKQAGSAP DLPPGFRFHP TDEELVVHYL KKKAASAPLP 60 VAIIAEVDLY KFDPWELPDK ATFGEHEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK 120 PILAYTGSRE KVGVKKALVF YRGKPPKGLK TNWIMHEYRL ADAPGSATAH RPPPGAGGGK 180 ATSLRLDDWV LCRIYKKTNK LGLGDHQRSL ECEDSVEDAV VAAYHTHAAA PVVAAAGGGG 240 GNYTSLLHHH NGHEDHSFLD GLLTAEDAAG LSAGASSLSH LAAAARAAPS ATKQLLVPSS 300 TPFDWLDTSA LAILPPTKRF HGYSSSRDTT TDGGMSLSSP SDRNHLAAVG AGAVDNGASG 360 GGGGASAIPA FLNPLGVQAA VTYHHHAILG TPVPPEAAAA AACTFQHPYQ LSGVNWNP*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MRSMESTDSS SGSAPPRRRQ QQQKQAGSAP DLPPGFRFHP TDEELVVHYL KKKAASAPLP  60
VAIIAEVDLY KFDPWELPDK ATFGEHEWYF FSPRDRKYPN GARPNRAATS GYWKATGTDK  120
PILAYTGSRE KVGVKKALVF YRGKPPKGLK TNWIMHEYRL ADAPGSATAH RPPPGAGGGK  180
ATSLRLDDWV LCRIYKKTNK LGLGDHQRSL ECEDSVEDAV VAAYHTHAAA PVVAAAGGGG  240
GNYTSLLHHH NGHEDHSFLD GLLTAEDAAG LSAGASSLSH LAAAARAAPS ATKQLLVPSS  300
TPFDWLDTSA LAILPPTKRF HGYSSSRDTT TDGGMSLSSP SDRNHLAAVG AGAVDNGASG  360
GGGGASAIPA FLNPLGVQAA VTYHHHAILG TPVPPEAAAA AACTFQHPYQ LSGVNWNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-71	20	200	3	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG494200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT085989	1e-173	BT085989.1 Zea mays full-length cDNA clone ZM_BFc0095M07 mRNA, complete cds.
GenBank	BT086467	1e-173	BT086467.1 Zea mays full-length cDNA clone ZM_BFc0169O24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	0.0	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	0.0	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2S3H3E5	0.0	A0A2S3H3E5_9POAL; Uncharacterized protein
STRING	Pavir.J08552.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-91	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Pavir.2KG494200.1.p

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]