PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG467700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 64521.2 Da PI: 6.4648 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 419.5 | 2.8e-128 | 199 | 568 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 ++lL++cAea+s++ + +l+++ + +s +g+p+qRl ay++e+L ar +s++++y+al+++e + s e l+++k+++ ++P++ Pavir.2KG467700.1.p 199 KQLLTKCAEALSEERIDEFFKLVQQARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SNELLSYMKILYSICPYF 285 689*****************************************************************9...99**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179 kf++++aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+ + e le +g+ L+++ ee+++p+ef+ Pavir.2KG467700.1.p 286 KFGYMAANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLELVGKMLKSMSEEFRIPLEFT 375 ***********************************************************999999************************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +l ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+ Pavir.2KG467700.1.p 376 PLPGFYATQVTKEMLDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFSETMDYYSAMFE 465 *97779999********************************************************************************* PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 s++++lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +++ll+ ++ d y++ee++ +++ Pavir.2KG467700.1.p 466 SIDVNLPRDSKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIRRLLACYS-DKYTLEEKDSAML 554 *************************************************************************999.55*********** PP GRAS 360 lgWkdrpLvsvSaW 373 lgWk+r+L+s+SaW Pavir.2KG467700.1.p 555 LGWKNRKLISASAW 568 ************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.012 | 172 | 550 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.8E-126 | 199 | 568 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MDLHQLLKYR LAGANVFYEF PTENNLANIP WPVSPLKSEF SNSPYTLSAQ LECDNLSAIS 60 NTPDNQSSTE TISAQPISPL EVDSSYRQAG ILRENTQVRP DPLYATSRHN MQHTLREIET 120 VLMAPDADDA ANGTKHEFEE HKPTQLMRQR SRTWSHESRQ PSPGVVRTQF GSGYPTASYD 180 FRPEKRQREL REDPQSMVKQ LLTKCAEALS EERIDEFFKL VQQARGVVSI TGEPIQRLGA 240 YLLEGLVARH GNSGTNIYRA LKCREPESNE LLSYMKILYS ICPYFKFGYM AANGAIAEAL 300 RNEDKIHIID FQIAQGTQWI TLIQALAARP GGPPHVRITG IDDPVSEYAR GEGLELVGKM 360 LKSMSEEFRI PLEFTPLPGF YATQVTKEML DIRPGEALAV NFTLQLHHTP DESVDVNNPR 420 DGLLRMVKGL SPKVTTLVEQ ESHTNTTPFL MRFSETMDYY SAMFESIDVN LPRDSKERIN 480 VEQHCLAKDI VNIIACEGKD RVERHELLGK WKSRLTMAGF KPYPLSSYVN SVIRRLLACY 540 SDKYTLEEKD SAMLLGWKNR KLISASAWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-67 | 182 | 568 | 3 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6458 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG467700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727860 | 0.0 | KJ727860.1 Zea mays clone pUT5952 GRAS transcription factor (GRAS49) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800433.1 | 0.0 | chitin-inducible gibberellin-responsive protein 1 isoform X1 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A2S3H309 | 0.0 | A0A2S3H309_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EX23 | 0.0 | A0A2T7EX23_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02923.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10631 | 36 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-180 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG467700.1.p |
Publications ? help Back to Top | |||
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