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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.2KG444600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 386aa MW: 40761.9 Da PI: 6.6902 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG444600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+lv++++ +G +W++++++ g+ R++k+c++rw +yl
Pavir.2KG444600.1.p 13 RGLWSPEEDEKLVKYITAHGHSCWSAVPKHAGLQRCGKSCRLRWINYL 60
788*******************************************97 PP
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2 | Myb_DNA-binding | 50.6 | 4.6e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
Pavir.2KG444600.1.p 66 RGTFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
899*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVKYITA HGHSCWSAVP KHAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPKTHNLLPA SRSLLHGNGA ANPSNPAQFH SNGAIANGGA TTPFTISSPT KAAYDIVTAP 180 PPPEMAPAMY EYDDVPNSAG MLMGHDQAAA AAIPPGYPYT DNGGGVLMSF RDQNNAAGLQ 240 TSMDFMNGSS SSSSMDHAAG MPNGNGFSQS MGAAFVDVTA GMWTTAAVES GMCAGMEVGQ 300 QQQQQQQPLP PHGGLVQGEV VVGRPPVLNG GGAAADKGMD MMDVSSVYGG AGVAAFDLEL 360 MESCGLFCGG GGGAGNAMEQ LQWDC*
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