PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG433300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 351aa MW: 34735.7 Da PI: 7.9969

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG433300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.5e-39	39	98	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ Pavir.2KG433300.1.p 39 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 98 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.6E-33	41	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	42	96	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-27	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAGAGGATAV QQPAAGAPPA GARSGGAGAA GAPVADPRAE ALRCPRCDSA NTKFCYYNNY 60 SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRSRSS SAAGAGGRSG SSAAAAVTSS 120 SAASTLPLPP PAGSLPSLTS ALGLPGGTSL ASLLLGSGTG GDHLGLFQAA MQSVVSSEAT 180 ACYEMQQQQT QVDHLLGLGY GGAGAGAQIH QQLKPWMQEA RAGAGGIMDS FYAPLLSSSL 240 VPGLEELHVK AEAAGAGDHQ QKAAPGDQQQ QSGGSWELPT PSPSNVDASI IASDALMAAA 300 ASLNPAVSST STAATTAPSS FMYWDNGGIG GAAAAWPDLA NCGSSIATLF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAGAGGATAV QQPAAGAPPA GARSGGAGAA GAPVADPRAE ALRCPRCDSA NTKFCYYNNY  60
SLSQPRHFCK ACKRYWTRGG TLRNVPVGGG CRKNKRSRSS SAAGAGGRSG SSAAAAVTSS  120
SAASTLPLPP PAGSLPSLTS ALGLPGGTSL ASLLLGSGTG GDHLGLFQAA MQSVVSSEAT  180
ACYEMQQQQT QVDHLLGLGY GGAGAGAQIH QQLKPWMQEA RAGAGGIMDS FYAPLLSSSL  240
VPGLEELHVK AEAAGAGDHQ QKAAPGDQQQ QSGGSWELPT PSPSNVDASI IASDALMAAA  300
ASLNPAVSST STAATTAPSS FMYWDNGGIG GAAAAWPDLA NCGSSIATLF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG433300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582403	0.0	KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803596.1	1e-160	dof zinc finger protein 2-like
TrEMBL	A0A3L6T9P7	1e-162	A0A3L6T9P7_PANMI; Dof zinc finger protein DOF5.1-like
STRING	Sb02g034320.1	1e-140	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	5e-33	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Pavir.2KG433300.1.p