PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

SBP

Protein Properties

Length: 212aa MW: 21637.5 Da PI: 9.5742

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG430000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.1	1.6e-40	87	164	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+ea +y+rrhkvC++hsk+pvvlv+gl+qrfCqqCsrfhelsefDe+krsCr rLa+hnerrrk++a Pavir.2KG430000.1.p 87 RCQAERCNADLNEAAQYNRRHKVCQTHSKSPVVLVAGLRQRFCQQCSRFHELSEFDENKRSCRLRLAGHNERRRKSAA 164 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.6E-33	83	149	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.872	85	162	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-37	86	167	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.3E-31	88	161	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MDRRDKSRRG SSSSAVAAAS MAALAAAAAA GEGSSSGSGS ADGALPPHAE EEEDQKPPKL 60 AAVGGASSSS PSPVPARRGA AAGGGPRCQA ERCNADLNEA AQYNRRHKVC QTHSKSPVVL 120 VAGLRQRFCQ QCSRFHELSE FDENKRSCRL RLAGHNERRR KSAADTHGHG GGGGSSSNGG 180 GGGGAGDGCR HADQDGRGHQ GNPPPNHFQI R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-34	79	161	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17473	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00634	PBM	Transfer from PK22320.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG430000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065445	3e-88	BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957796.1	5e-74	squamosa promoter-binding-like protein 13
Swissprot	Q6Z461	2e-50	SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBL	A0A3L6T7T3	2e-78	A0A3L6T7T3_PANMI; Squamosa promoter-binding-like protein 13
STRING	Pavir.Bb02800.1.p	1e-147	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8524	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-36	squamosa promoter binding protein-like 3

Link Out ? help Back to Top
Phytozome	Pavir.2KG430000.1.p