PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG426300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 105aa MW: 10815.8 Da PI: 8.2176 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Pavir.2KG426300.1.p 29 YECSFCKRGFTNAQALGGHMNIH 51 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.3E-6 | 28 | 53 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.69E-7 | 28 | 55 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.009 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 29 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MEGGFNKAGS PEASGEGGGT RRAPAGAYYE CSFCKRGFTN AQALGGHMNI HRKDRGGKPG 60 TAPPQQDDAG GSRTYGGGDV HLGLSLGRKD DVDLELRLGG YPYN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG426300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947976 | 6e-79 | EU947976.1 Zea mays clone 368057 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799920.1 | 1e-66 | zinc finger protein JAGGED-like | ||||
TrEMBL | A0A2S3GXD6 | 3e-65 | A0A2S3GXD6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ENG2 | 3e-65 | A0A2T7ENG2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6QRR2 | 3e-65 | A0A3L6QRR2_PANMI; Putative transcriptional regulator RABBIT EARS | ||||
STRING | Pavir.Bb00955.1.p | 1e-69 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6363 | 32 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 1e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG426300.1.p |