PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 334aa MW: 35848 Da PI: 7.9271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG419900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	35	58	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s + H H Pavir.2KG419900.3.p 35 FKCHVCHKKLSTASGMAIHVLQvH 58 89***************9987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50808	10.844	6	65	IPR003656	Zinc finger, BED-type
SMART	SM00355	2.8	11	34	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	13	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.1	35	58	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	58	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGKKKKRVEK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM AIHVLQVHKE 60 SVTKVPNAKP DRESTDIEIF GMQGIPAHVL AAHYGEEEDP SAKVAKVEVP QVRPVIMPNN 120 LGMAFPPRPP YGVAPPIYNP ALNPLMARPP IWPTPPAQAW YPQQVAYPQQ PQVSVAPVVA 180 GLPPQQPLFP IQNVPTPMTS APANILQTSF PMAPPGVPSP VAPQDSQPLF PVNTSVVNGA 240 ASSPFVASVA PGTIPASSPA AVGYGANNQG TGGPAVGSSP AVSNNKASST QPATNEVYLV 300 WDDEAMSMEE RRLSLPKYQV HDETSQVSCV FYV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5067	0.0	callus\| leaf\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Barely detectable in 3-days-old seedling, and then increases. {ECO:0000269\|PubMed:17138694}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot apex, leaves, stem and flowers. Expressed in expanding leaves, in the vasculature of fully expanded leaves, in the inflorescence, throughout young floral primordia, in the carpels of older flowers and in fertilized ovules. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Functional Description ? help Back to Top
Source	Description
UniProt	Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694, ECO:0000269\|PubMed:19121105, ECO:0000269\|PubMed:21282526}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG419900.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269\|PubMed:17079264, ECO:0000269\|PubMed:17138694}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT037992	0.0	BT037992.1 Zea mays full-length cDNA clone ZM_BFb0206A01 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800069.1	0.0	protein SUPPRESSOR OF FRI 4 isoform X3
Swissprot	Q9C5G0	1e-104	SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBL	A0A2T7EVW2	0.0	A0A2T7EVW2_9POAL; Uncharacterized protein
STRING	Pavir.J03264.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30970.1	6e-98	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.2KG419900.3.p

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645] Resentini F, et al. SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression. Plant Physiol., 2017. 173(1): p. 155-166 [PMID:27920160]