 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2KG418200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C2H2 |
| Protein Properties |
Length: 171aa MW: 17767.8 Da PI: 6.92 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG418200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.1 | 0.00014 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+++F ++ L H++ H
Pavir.2KG418200.1.p 40 FACNYCHRRFYSSQALGGHQNAH 62
78******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MENEPPPAPG GVSLDDLSPR RRRSSPAPAA DDRRPPGEAF ACNYCHRRFY SSQALGGHQN 60
AHKLERTLAK RSRDILAAPA PPPAVVFRPA TPECSSRDGF PLPTAYGATT WSSVGAEDAT 120
ALQAAPPAAQ SVVMDMAGWG AEAADGGCGR LGLGLGHGRN GEEIDLSLKL *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT086880 | 7e-55 | BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds. |
| GenBank | BT086917 | 7e-55 | BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds. |
| GenBank | BT087160 | 7e-55 | BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds. |
| GenBank | EU960522 | 7e-55 | EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds. |
