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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.2KG418200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C2H2 |
Protein Properties |
Length: 171aa MW: 17767.8 Da PI: 6.92 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG418200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+++F ++ L H++ H
Pavir.2KG418200.1.p 40 FACNYCHRRFYSSQALGGHQNAH 62
78******************988 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MENEPPPAPG GVSLDDLSPR RRRSSPAPAA DDRRPPGEAF ACNYCHRRFY SSQALGGHQN 60 AHKLERTLAK RSRDILAAPA PPPAVVFRPA TPECSSRDGF PLPTAYGATT WSSVGAEDAT 120 ALQAAPPAAQ SVVMDMAGWG AEAADGGCGR LGLGLGHGRN GEEIDLSLKL *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT086880 | 7e-55 | BT086880.2 Zea mays full-length cDNA clone ZM_BFb0022A09 mRNA, complete cds. |
GenBank | BT086917 | 7e-55 | BT086917.2 Zea mays full-length cDNA clone ZM_BFb0119B18 mRNA, complete cds. |
GenBank | BT087160 | 7e-55 | BT087160.2 Zea mays full-length cDNA clone ZM_BFb0177L16 mRNA, complete cds. |
GenBank | EU960522 | 7e-55 | EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds. |