PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG414700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 513aa MW: 52702.8 Da PI: 9.365 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.2e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Pavir.2KG414700.1.p 71 FVCEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pavir.2KG414700.1.p 147 WKCDKCNKRYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.9E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.06E-7 | 70 | 93 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.3E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 300 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.7E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.06E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 110 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MAAASSAPFF GLGDTQMQPS LQQNSSAAAA APGAAAAAAP PKKKRNQPGN PNPDAEVIAL 60 SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKEARRR VYLCPEPTCV 120 HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAR ESAQMPPLGA GLYVGSGSMS LGLSGAAAQM HGFGDQAGQS 240 SSAAAAAQFD HIMPPSSGPS LFRSQVSAAS SSSFFLGGGA PPPAPDFSDD PQGGQGSSLL 300 HSKSPFQGLM QLPEQQRQPG SSNANGNLLN LGFFSGNGGG SAGGQDARLV VQDQFNGGGG 360 GGGNADHGSV MASMGSHLSC GSFPSSLYNS SPSAGLAQNS ATALLMKAAQ MGSTSSAQNG 420 PSALLRAAGF SAASGQGTTS RACGEGTSHE AHFHDLIMNS LAGGGGGGFS GGAGFGAVDD 480 GKLSTRDFLG VGRGAMAPPG LHIGALDPAQ MK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 143 | 208 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 143 | 208 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4524 | 0.0 | callus| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG414700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754865 | 0.0 | AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957598.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_004957599.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_004957600.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8GYC1 | 1e-122 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | K3ZSG0 | 0.0 | K3ZSG0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Bb02566.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 1e-109 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG414700.1.p |
Publications ? help Back to Top | |||
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