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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2KG366200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 347aa MW: 36812.3 Da PI: 6.5164 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG366200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.6 | 2.6e-14 | 122 | 173 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r++h ++Er+RR+++N+ ++ Lr+l+P+a ++++ + a+i+ A++++k+L+
Pavir.2KG366200.1.p 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPA---YAQRGDQASIVGGAINFVKELE 173
79****************************...*******************995 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MALEAVVLSQ SQQQGSSRRF GCGAMAGGPW NGLFWGAEGP VESGGAGVGS WDDAAACSSS 60 MLLLREFQEP AGDIAAATVP PVESGASVVG QAEATAVAPA PLARRKRRRT RAVKNKEEAE 120 SQRMTHIAVE RNRRKQMNEY LAVLRSLMPP AYAQRGDQAS IVGGAINFVK ELEQLLQSLE 180 ARRPRSAQRP GTGGGGGDDA APFAGFFTFP QYSMRAAAAP EHAPAPADDA TTHRDGAAEA 240 EDASGSKPSA VADVEATMVE SHANLRVLSR LRPRQLLRLV VGLQGHRLTV LHLNMSSAGQ 300 MVLYSFSLKV EDDCQLTSVD QIAAATHQIV ENIYQEQGCS LEQHQS*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 104 | 108 | RKRRR |
2 | 104 | 109 | RKRRRT |
3 | 122 | 133 | RMTHIAVERNRR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT056041 | 1e-100 | BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds. |
GenBank | EU951970 | 1e-100 | EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds. |
GenBank | KJ728035 | 1e-100 | KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds. |