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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG341000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 496aa MW: 53527.8 Da PI: 9.3112 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.4 | 8.5e-14 | 159 | 216 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ +++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Pavir.2KG341000.2.p 159 SIYRGVT--RWTGRFEAHLWDkNSWNEtqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 216 579***7..48**********888866656446*************************98 PP | |||||||
2 | AP2 | 51.6 | 2.3e-16 | 259 | 310 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Pavir.2KG341000.2.p 259 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 310 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-15 | 159 | 226 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-15 | 160 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-22 | 160 | 230 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-8 | 160 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.714 | 160 | 224 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-12 | 259 | 310 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 259 | 320 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.47E-23 | 259 | 320 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 260 | 319 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-25 | 260 | 324 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 260 | 318 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MDQKNGRERE RGRRERGPAG LHHFSPLLSF YLLCSFGICP ALQTPAQPIL PPHHPAIPNP 60 CPPSLSLHVF KTATSRGHHS WPPTSLPSSS SSSSSLSLSS SFHSSLAMAK PRKNSAAAAA 120 AAGNSSSSGA AAAGDAGVRV KPKRTRKSVP RESPSQRSSI YRGVTRWTGR FEAHLWDKNS 180 WNETQNKKGK QVYLGAYDDE EAAARAYDLA ALKYWGPDTI LNFPASAYEE ELKEMEGQSR 240 EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAMA 300 YDMAAIEYRG LNAVTNFDLS RYIKWLRPGA DGGVAAAAAA QNPHPMLGAL AQQQLPPADA 360 VVDAFQQDRR RAEFPLPPRT SLGHTPTTSA LSLLLQSPKF KEMIERTSAA ESGTTTSSSS 420 SPPTPPSPSP PPPPSAQAQH HAAREGGAAS PQCGFPEDIQ TFFGCEDVAG VDVDALFFGD 480 LAAYASPAFH FELDL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.14504 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG341000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039632 | 0.0 | BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds. | |||
GenBank | BT055111 | 0.0 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. | |||
GenBank | KJ727588 | 0.0 | KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799409.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-103 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2S3H033 | 0.0 | A0A2S3H033_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02213.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-91 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG341000.2.p |
Publications ? help Back to Top | |||
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