PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG327500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 378aa    MW: 39889.2 Da    PI: 6.786
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG327500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.4e-40751751101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG++n++k+l+ +++e+ +dam++l+y++eara dPv G+v +i +lq+q+e++
  Pavir.2KG327500.1.p  75 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVKNIQKTLRWIDPERGPDAMRALIYQSEARAADPVGGCVTIIEQLQRQIERT 164
                          7***************************************************************************************** PP

               DUF260  91 kaelallkeel 101
                          + ela++k+++
  Pavir.2KG327500.1.p 165 ELELAYVKQQI 175
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.29274175IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-3775172IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSSTSSSKQ PPSLLRLHVD TAAATTTNGS GASPGSSTKS SSRSSRSPRP SASASASAAA  60
TGGPGGGKNP NQNQACAACK YQRRKCNPDC PLAPYFPADQ QRRFLNAHRL FGVKNIQKTL  120
RWIDPERGPD AMRALIYQSE ARAADPVGGC VTIIEQLQRQ IERTELELAY VKQQIAFYRQ  180
AAAVDPLADP AAMILPPAAT ATVAGQDHQD GNAAAVAVGA LYAGQDPVPS GAGLVFHDQQ  240
QGYHHHGLLK VADQQNHPPP QQLYNYFCYD GTPAAGEAST QDGSVQHYGG FADTGGGLKI  300
VSPVVALGEQ LEQQCQLHAF DVKPQGLRAT TERRHGGPAD DLMRPGDHHG DVDQHMEDEP  360
ATAVAAPCHL ELGFSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-26691685104LOB family transfactor Ramosa2.1
5ly0_B2e-26691685104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG327500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053884e-52AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBankAP0149644e-52AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126164e-52CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680048.14e-93LOB domain-containing protein 6-like
TrEMBLA0A2S3GZ981e-164A0A2S3GZ98_9POAL; Uncharacterized protein
STRINGPavir.J09527.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.16e-39LOB domain-containing protein 22