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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.2KG310000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 414aa MW: 45960.9 Da PI: 7.7854 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.9 | 9.4e-08 | 164 | 227 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv+a ++ + W I+ t + +Rt+kq+k++w +y Pavir.2KG310000.1.p 164 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 227 789**********************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.411 | 159 | 228 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.06E-5 | 161 | 230 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-5 | 163 | 230 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-6 | 163 | 226 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MANWSPNMQS YFDLLNADPE RSTTHTPGTN ASEEEFDYSP LHRRSETAPP SQPRAMFPPA 60 PGAFIGAPPP YPYPSYPYPP YPYPPAPATS RVAPPPYPYP APMTDAPPPY PYPPYPYPPY 120 PYPPPPTFTT SAPHGHAGGA ASAGSENEGG GTTAPCRPAI PKKRNEWTPA DEEKLVNAWL 180 MHSVDCVDGN SKSGPTFWGQ ISDTYNATTD PLRHRTAKQL KDHWSMYNAR VSLFNAIYNQ 240 EVSKRQSGAD DDMVMDEAKA RYARRAGHEF KLFHWWEAVR HQPKWSVKHG GGPNIDVSKR 300 SRLGTSGEYS SGSRETDEEV NRPPGRDRSK AAARKGKGKV GSSSHSSTDS AEMGEKLEDL 360 CKITHEYAQA KLWKQWNILS SRSTDGMTDA QKKVHDRALK RLQQQLHLND DDE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.2KG310000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.J22374.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.2KG310000.1.p |