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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.2KG299800.2.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
MYB |
Protein Properties |
Length: 180aa MW: 20188.1 Da PI: 11.4196 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.2KG299800.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv G +W+++++ g+ R++k+c++rw +yl
Pavir.2KG299800.2.p 14 KGPWTAEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 56.5 | 6.5e-18 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
g ++eE++ ++++++lG++ W++Ia++++ gRt++++k++w+++
Pavir.2KG299800.2.p 68 GMLSEEEEKTVIELHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
5669*****************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGML SEEEEKTVIE LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPANPQAPP ARSSSSSSGS SRLAGGREDR RHGSHARTRG VLHRRRAHGA PPGRHRVSR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT083735 | 1e-146 | BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds. |
GenBank | BT085521 | 1e-146 | BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds. |
GenBank | BT085625 | 1e-146 | BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds. |