 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2KG264900.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NF-YB |
| Protein Properties |
Length: 171aa MW: 18815.1 Da PI: 4.6608 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG264900.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 53.1 | 7.7e-17 | 35 | 134 | 6 | 97 |
NF-YB 6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
++lP a v r++k l a + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l
Pavir.2KG264900.2.p 35 EELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFSEFVEPLRISL 124
578999999999988865431111122158899999****************************************************** PP
NF-YB 88 kkyrelegek 97
+++r+ +++k
Pavir.2KG264900.2.p 125 QEFRNKNADK 134
****998876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MPRKATKEAE PQPAAAAQEE PAPAPAAAMA EAEVEELPKA IVRRLVKDKL AHVAGGGEGA 60
EVIVNKDAMA AFAESARIFI HYLSATANDM CKESKRQTIN ADDVLKALDE MEFSEFVEPL 120
RISLQEFRNK NADKRSEANK KQKEKRRKLN EESLPQKEND PADDAEENDD *
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060559 | 1e-155 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. |
| GenBank | EU962697 | 1e-155 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. |
| GenBank | EU964046 | 1e-155 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. |
| GenBank | KJ728301 | 1e-155 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
