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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2KG230400.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 343aa MW: 37192.4 Da PI: 10.404 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG230400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 335.4 | 1.4e-102 | 1 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.........rernlalsekkaavaerd..................maf 60
mdddg rn+g+y+ + lglqlmss++ +rd+k+ ++ +++ + +++++rd m+f
Pavir.2KG230400.1.p 1 MDDDGGLGiRNWGFYDMK----GSLGLQLMSSVPvaDRDTKLllpagaflqHHGHHNAPPQLHPHHSRDaggggtsggmptepqsihMDF 86
999999999******855....8999******9888******999999998777777778888999************************ PP
GAGA_bind 61 lqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlse..pqledsavelreee 130
+++++++ ++ ++r++k+l+ +v + ++ p+g++++++++++ +++q + + +ql++++ +e+
Pavir.2KG230400.1.p 87 SRNEAWVHP-SHHQHPREQKVLHARPVGPAGHvghpghgghpvhgghavHHRPTGYGIIPDASHAlQMMQVQPQlqSQLQEPPPC--KED 173
*********.9999***********99988778999************99*********99877615555533333444444333..444 PP
GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalr 220
++p+ e ++ +k+++ +kkr+++++p ++k kk+kk ++++++ + +++ +r + +kk++++v+ng++lD s+lP+PvCsCtGa++
Pavir.2KG230400.1.p 174 D-VSPPLIEDKSLVKTEPPVKKRRQGRQPNSPKPKKPKK-AAVPREDRAVNGHAPRGRGPKKTVGMVINGIELDLSNLPTPVCSCTGAPQ 261
4.45555566777777788888*****************.88999999999999************************************ PP
GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfvtir
Pavir.2KG230400.1.p 262 QCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVTIR 342
********************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MDDDGGLGIR NWGFYDMKGS LGLQLMSSVP VADRDTKLLL PAGAFLQHHG HHNAPPQLHP 60
HHSRDAGGGG TSGGMPTEPQ SIHMDFSRNE AWVHPSHHQH PREQKVLHAR PVGPAGHVGH 120
PGHGGHPVHG GHAVHHRPTG YGIIPDASHA LQMMQVQPQL QSQLQEPPPC KEDDVSPPLI 180
EDKSLVKTEP PVKKRRQGRQ PNSPKPKKPK KAAVPREDRA VNGHAPRGRG PKKTVGMVIN 240
GIELDLSNLP TPVCSCTGAP QQCYRWGAGG WQSACCTTSI STYPLPMNTK RRGARIAGRK 300
MSQGAFKKVL EKLVGEGYNL ANPIDLKTFW AKHGTNKFVT IR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
