PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG230400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BBR-BPC
Protein Properties Length: 343aa    MW: 37192.4 Da    PI: 10.404
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG230400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind335.41.4e-10213421301
            GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.........rernlalsekkaavaerd..................maf 60 
                          mdddg    rn+g+y+ +      lglqlmss++  +rd+k+         ++ +++   + +++++rd                  m+f
  Pavir.2KG230400.1.p   1 MDDDGGLGiRNWGFYDMK----GSLGLQLMSSVPvaDRDTKLllpagaflqHHGHHNAPPQLHPHHSRDaggggtsggmptepqsihMDF 86 
                          999999999******855....8999******9888******999999998777777778888999************************ PP

            GAGA_bind  61 lqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlse..pqledsavelreee 130
                           +++++++   ++ ++r++k+l+  +v  +                   ++ p+g++++++++++ +++q + +  +ql++++    +e+
  Pavir.2KG230400.1.p  87 SRNEAWVHP-SHHQHPREQKVLHARPVGPAGHvghpghgghpvhgghavHHRPTGYGIIPDASHAlQMMQVQPQlqSQLQEPPPC--KED 173
                          *********.9999***********99988778999************99*********99877615555533333444444333..444 PP

            GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalr 220
                             ++p+ e ++ +k+++ +kkr+++++p ++k kk+kk  ++++++ + +++ +r + +kk++++v+ng++lD s+lP+PvCsCtGa++
  Pavir.2KG230400.1.p 174 D-VSPPLIEDKSLVKTEPPVKKRRQGRQPNSPKPKKPKK-AAVPREDRAVNGHAPRGRGPKKTVGMVINGIELDLSNLPTPVCSCTGAPQ 261
                          4.45555566777777788888*****************.88999999999999************************************ PP

            GAGA_bind 221 qCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          qCY+WG+GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfvtir
  Pavir.2KG230400.1.p 262 QCYRWGAGGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVTIR 342
                          ********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062177.9E-1141342IPR010409GAGA-binding transcriptional activator
SMARTSM012262.1E-1711342IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYDMKGS LGLQLMSSVP VADRDTKLLL PAGAFLQHHG HHNAPPQLHP  60
HHSRDAGGGG TSGGMPTEPQ SIHMDFSRNE AWVHPSHHQH PREQKVLHAR PVGPAGHVGH  120
PGHGGHPVHG GHAVHHRPTG YGIIPDASHA LQMMQVQPQL QSQLQEPPPC KEDDVSPPLI  180
EDKSLVKTEP PVKKRRQGRQ PNSPKPKKPK KAAVPREDRA VNGHAPRGRG PKKTVGMVIN  240
GIELDLSNLP TPVCSCTGAP QQCYRWGAGG WQSACCTTSI STYPLPMNTK RRGARIAGRK  300
MSQGAFKKVL EKLVGEGYNL ANPIDLKTFW AKHGTNKFVT IR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.117070.0callus| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG230400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802067.10.0protein Barley B recombinant-like
SwissprotQ8GUC31e-144BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3L6TF080.0A0A3L6TF08_PANMI; Protein Barley B recombinant-like
STRINGPavir.J31488.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-62basic pentacysteine1