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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.2KG230000.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 337aa MW: 36632.8 Da PI: 10.3315 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG230000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 332.7 | 9.8e-102 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia..erdaki.........rernlalsekkaavaerd..................maf 60
mdddg rn+g+y+ + lglqlmss++ +rd+k ++ +++ + +++++r+ m+f
Pavir.2KG230000.1.p 1 MDDDGGLGiRNWGFYDMK----GSLGLQLMSSVPvaDRDTKSllpagaflpHHGHHNAPPQLHPHHSRNaggggtsggmptepqsihMDF 86
999999999******855....8999******9888*****9999999999777777788888999999********************* PP
GAGA_bind 61 lqrdkalaernkalverdnkllalllvensla...........salpvgvqvlsgtksi.dslqqlsepqledsave.lreeeklealpi 137
+++++++ ++ ++r++k+l+ +v + ++ p+g++++++++++ +++q +pql+ + +e + +e ++p+
Pavir.2KG230000.1.p 87 SHNEAWVHP-LHHQHPREQKVLHARPVGPAGHvghpvhgghavHHRPTGYGIIPDASHAlQMMQV--QPQLQSQLQEpPPCKEDDVSPPL 173
*********.89999**********9998877789999***999*********998776155554..45555444443333455567777 PP
GAGA_bind 138 eeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
+e ++ +k+++ +kkr ++++pk++k kk+kk ++++++ + +++ +r + +kk++++v+ng++lD s+lP+PvCsCtGa++qCY+WG+
Pavir.2KG230000.1.p 174 VEDQSLVKTEPPVKKRWQGRQPKSPKPKKPKK-AAVPREDRAVNGHAPRGRGTKKTVGMVINGIELDLSNLPTPVCSCTGAPQQCYRWGA 262
888888888899999*****************.88999999999999******************************************* PP
GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
GGWqSaCCtt+iS+yPLP++tkrrgaRiagrKmSqgafkk+LekL +eGy+++np+DLk++WAkHGtnkfvtir
Pavir.2KG230000.1.p 263 GGWQSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLVGEGYNIANPIDLKTFWAKHGTNKFVTIR 336
*************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MDDDGGLGIR NWGFYDMKGS LGLQLMSSVP VADRDTKSLL PAGAFLPHHG HHNAPPQLHP 60
HHSRNAGGGG TSGGMPTEPQ SIHMDFSHNE AWVHPLHHQH PREQKVLHAR PVGPAGHVGH 120
PVHGGHAVHH RPTGYGIIPD ASHALQMMQV QPQLQSQLQE PPPCKEDDVS PPLVEDQSLV 180
KTEPPVKKRW QGRQPKSPKP KKPKKAAVPR EDRAVNGHAP RGRGTKKTVG MVINGIELDL 240
SNLPTPVCSC TGAPQQCYRW GAGGWQSACC TTSISTYPLP MNTKRRGARI AGRKMSQGAF 300
KKVLEKLVGE GYNIANPIDL KTFWAKHGTN KFVTIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064015 | 1e-152 | BT064015.1 Zea mays full-length cDNA clone ZM_BFc0131I22 mRNA, complete cds. |
