PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG224700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 252aa    MW: 27415.9 Da    PI: 8.3611
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF369e-12445344
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         i++ + r  tf +Rr+g+ KKA E S LC+ +vav+ ++s g
  Pavir.2KG224700.1.p  4 IDEARSRARTFKRRRKGLKKKACEFSKLCGFDVAVVCAGSGG 45
                         788899999****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0014157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.839145IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-14276IPR002100Transcription factor, MADS-box
PfamPF003194.7E-13444IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MALIDEARSR ARTFKRRRKG LKKKACEFSK LCGFDVAVVC AGSGGGGTLD VSEFGSAGVI  60
GRYHRLPADK RAKHTHLNYL NAELGKVRKE QDKLPKQRQA GPKKLASPGA ALLKGMNLEE  120
LPGSIDAALL ATTQRRKALG MPDDGSPPAW IDELTWHGVD QNNLLDASMT MQQPASGVQY  180
INGGSSEDMD MGGNHYRNLQ QMGGDAKNDH GQQPWDTYQL HSTVLCPDYG FQYTDSNCSY  240
SGMADCPQMP AV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG224700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DCL91e-123A0A2T7DCL9_9POAL; Uncharacterized protein
STRINGPavir.J13519.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960