PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG218200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 901aa MW: 97268.6 Da PI: 6.3263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG218200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	753	771	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C++Cg++Fs ++L++H Pavir.2KG218200.2.p 753 YQCKICGERFSLEEELRSH 771 9****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-4	749	772	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.432	753	783	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MRHLFGTWKG VFPPPPLQTI EKELGFQSSA NGSSSAAPSR PDSQSPRPSN SIHVNPKYLE 60 ARQQLNQPTK GILGSGAKAA VIADAGDDVE RPNRLGTDRS AGRRLDAPNA RPNIQRTQRD 120 PFSNPVNEKQ AGRDVRGLGL SSISQQAVVG TGQVRSKPKG QDGIGGLYYG TDVGSSEEQF 180 DRRSNFYSSK DVRPSGPVRL DSALLPTPSI NSDRIGRPSS NRSWKHSEEE EYVWDDVHSQ 240 AADYGGNNTV RKGEWMADDG NAKFASLQRA KWPEVGAVEH LDPNIHKLDS LPRFGLATGQ 300 DRRHAAYLDH EEYIHGRHEV EPRIDREIRP DGQQLPPHRS SSLWVSQEKV HPDIGLDPRI 360 SRFSNQPGER STIYTGTMSA SITSSVSVGL SGAYAGRSSL DSANSVPTRS TETFGQQKHR 420 YWSSSPPPVH SPSSTAPFAH QSSPNPAEPD FYPSRPFSQL GQNPQEEYSQ RVAAFAKDSH 480 FIAQNAGLTQ GQPSLQATQQ AQKYPTLQSK PHIKPTDQVQ ASFSRENSPS LCRPSIQLGE 540 VSLPTDSTPI RSDLTGASNL LAGLIKSGFK PNNPGDLASL RAQPLVPSGP LPHTLPSAPM 600 ASSSLQNAAG ENTTLQTQIT NTARPPLPPG LPPPPSTQSA EKAAPLSSLL SSLVAKGLIS 660 TPATDSSTAV PSQPNESSVN ATNVTAAAMP LPAQMPSVGK EASNSVSSAP TNVLLLKAVE 720 IKTGDLIGLE FKPEKLRKYN EHVISSLFGD RNYQCKICGE RFSLEEELRS HTTCGGSRAS 780 ETSFAGIAPK KWYPSKNSYI DGSNEMEDSA EASDVDLSSG EVCEFMVPAD ENQIICALCG 840 EPFDDFYSIE KGDWMYKDTV FLEFPNGESN CGSNVEGKEQ VPIVHVRCMP KDSNDGMEVD 900 *

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MRHLFGTWKG VFPPPPLQTI EKELGFQSSA NGSSSAAPSR PDSQSPRPSN SIHVNPKYLE  60
ARQQLNQPTK GILGSGAKAA VIADAGDDVE RPNRLGTDRS AGRRLDAPNA RPNIQRTQRD  120
PFSNPVNEKQ AGRDVRGLGL SSISQQAVVG TGQVRSKPKG QDGIGGLYYG TDVGSSEEQF  180
DRRSNFYSSK DVRPSGPVRL DSALLPTPSI NSDRIGRPSS NRSWKHSEEE EYVWDDVHSQ  240
AADYGGNNTV RKGEWMADDG NAKFASLQRA KWPEVGAVEH LDPNIHKLDS LPRFGLATGQ  300
DRRHAAYLDH EEYIHGRHEV EPRIDREIRP DGQQLPPHRS SSLWVSQEKV HPDIGLDPRI  360
SRFSNQPGER STIYTGTMSA SITSSVSVGL SGAYAGRSSL DSANSVPTRS TETFGQQKHR  420
YWSSSPPPVH SPSSTAPFAH QSSPNPAEPD FYPSRPFSQL GQNPQEEYSQ RVAAFAKDSH  480
FIAQNAGLTQ GQPSLQATQQ AQKYPTLQSK PHIKPTDQVQ ASFSRENSPS LCRPSIQLGE  540
VSLPTDSTPI RSDLTGASNL LAGLIKSGFK PNNPGDLASL RAQPLVPSGP LPHTLPSAPM  600
ASSSLQNAAG ENTTLQTQIT NTARPPLPPG LPPPPSTQSA EKAAPLSSLL SSLVAKGLIS  660
TPATDSSTAV PSQPNESSVN ATNVTAAAMP LPAQMPSVGK EASNSVSSAP TNVLLLKAVE  720
IKTGDLIGLE FKPEKLRKYN EHVISSLFGD RNYQCKICGE RFSLEEELRS HTTCGGSRAS  780
ETSFAGIAPK KWYPSKNSYI DGSNEMEDSA EASDVDLSSG EVCEFMVPAD ENQIICALCG  840
EPFDDFYSIE KGDWMYKDTV FLEFPNGESN CGSNVEGKEQ VPIVHVRCMP KDSNDGMEVD  900
*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.15915	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG218200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801398.1	0.0	uncharacterized protein LOC112880881
TrEMBL	A0A2T7EP41	0.0	A0A2T7EP41_9POAL; Uncharacterized protein
STRING	Pavir.Bb01710.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.2KG218200.2.p