PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2KG218200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 1062aa MW: 114269 Da PI: 6.7233

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2KG218200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	914	932	1	19
EEETTTTEEESSHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrH 19 y+C++Cg++Fs ++L++H Pavir.2KG218200.1.p 914 YQCKICGERFSLEEELRSH 932 9****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51391	36.271	61	189	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	1.0E-42	63	193	IPR008942	ENTH/VHS
SuperFamily	SSF48464	3.6E-38	64	183	IPR008942	ENTH/VHS
SMART	SM00582	3.2E-43	64	186	IPR006569	CID domain
CDD	cd03562	6.44E-42	68	177	No hit	No description
Pfam	PF04818	9.6E-10	117	170	IPR006903	RNA polymerase II-binding domain
Gene3D	G3DSA:3.30.160.60	3.4E-4	910	933	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.432	914	944	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence Send to blast
MRASASAAPM EASASARRSA PGPDPGAKKP RLAQPPPRDP RSSSYAAASN GAAASAAEQA 60 LVDELLGQYR TALGELTFNS KPIITNLTII AGENLQAAKP IAALICANIL EVPSEQKLPS 120 LYLLDSIVKN IGKDYVKHFS ARLPEVFCKA YKQVDPSIHH SMRHLFGTWK GVFPPPPLQT 180 IEKELGFQSS ANGSSSAAPS RPDSQSPRPS NSIHVNPKYL EARQQLNQPT KGILGSGAKA 240 AVIADAGDDV ERPNRLGTDR SAGRRLDAPN ARPNIQRTQR DPFSNPVNEK QAGRDVRGLG 300 LSSISQQAVV GTGQVRSKPK GQDGIGGLYY GTDVGSSEEQ FDRRSNFYSS KDVRPSGPVR 360 LDSALLPTPS INSDRIGRPS SNRSWKHSEE EEYVWDDVHS QAADYGGNNT VRKGEWMADD 420 GNAKFASLQR AKWPEVGAVE HLDPNIHKLD SLPRFGLATG QDRRHAAYLD HEEYIHGRHE 480 VEPRIDREIR PDGQQLPPHR SSSLWVSQEK VHPDIGLDPR ISRFSNQPGE RSTIYTGTMS 540 ASITSSVSVG LSGAYAGRSS LDSANSVPTR STETFGQQKH RYWSSSPPPV HSPSSTAPFA 600 HQSSPNPAEP DFYPSRPFSQ LGQNPQEEYS QRVAAFAKDS HFIAQNAGLT QGQPSLQATQ 660 QAQKYPTLQS KPHIKPTDQV QASFSRENSP SLCRPSIQLG EVSLPTDSTP IRSDLTGASN 720 LLAGLIKSGF KPNNPGDLAS LRAQPLVPSG PLPHTLPSAP MASSSLQNAA GENTTLQTQI 780 TNTARPPLPP GLPPPPSTQS AEKAAPLSSL LSSLVAKGLI STPATDSSTA VPSQPNESSV 840 NATNVTAAAM PLPAQMPSVG KEASNSVSSA PTNVLLLKAV EIKTGDLIGL EFKPEKLRKY 900 NEHVISSLFG DRNYQCKICG ERFSLEEELR SHTTCGGSRA SETSFAGIAP KKWYPSKNSY 960 IDGSNEMEDS AEASDVDLSS GEVCEFMVPA DENQIICALC GEPFDDFYSI EKGDWMYKDT 1020 VFLEFPNGES NCGSNVEGKE QVPIVHVRCM PKDSNDGMEV D*

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence Send to blast

MRASASAAPM EASASARRSA PGPDPGAKKP RLAQPPPRDP RSSSYAAASN GAAASAAEQA  60
LVDELLGQYR TALGELTFNS KPIITNLTII AGENLQAAKP IAALICANIL EVPSEQKLPS  120
LYLLDSIVKN IGKDYVKHFS ARLPEVFCKA YKQVDPSIHH SMRHLFGTWK GVFPPPPLQT  180
IEKELGFQSS ANGSSSAAPS RPDSQSPRPS NSIHVNPKYL EARQQLNQPT KGILGSGAKA  240
AVIADAGDDV ERPNRLGTDR SAGRRLDAPN ARPNIQRTQR DPFSNPVNEK QAGRDVRGLG  300
LSSISQQAVV GTGQVRSKPK GQDGIGGLYY GTDVGSSEEQ FDRRSNFYSS KDVRPSGPVR  360
LDSALLPTPS INSDRIGRPS SNRSWKHSEE EEYVWDDVHS QAADYGGNNT VRKGEWMADD  420
GNAKFASLQR AKWPEVGAVE HLDPNIHKLD SLPRFGLATG QDRRHAAYLD HEEYIHGRHE  480
VEPRIDREIR PDGQQLPPHR SSSLWVSQEK VHPDIGLDPR ISRFSNQPGE RSTIYTGTMS  540
ASITSSVSVG LSGAYAGRSS LDSANSVPTR STETFGQQKH RYWSSSPPPV HSPSSTAPFA  600
HQSSPNPAEP DFYPSRPFSQ LGQNPQEEYS QRVAAFAKDS HFIAQNAGLT QGQPSLQATQ  660
QAQKYPTLQS KPHIKPTDQV QASFSRENSP SLCRPSIQLG EVSLPTDSTP IRSDLTGASN  720
LLAGLIKSGF KPNNPGDLAS LRAQPLVPSG PLPHTLPSAP MASSSLQNAA GENTTLQTQI  780
TNTARPPLPP GLPPPPSTQS AEKAAPLSSL LSSLVAKGLI STPATDSSTA VPSQPNESSV  840
NATNVTAAAM PLPAQMPSVG KEASNSVSSA PTNVLLLKAV EIKTGDLIGL EFKPEKLRKY  900
NEHVISSLFG DRNYQCKICG ERFSLEEELR SHTTCGGSRA SETSFAGIAP KKWYPSKNSY  960
IDGSNEMEDS AEASDVDLSS GEVCEFMVPA DENQIICALC GEPFDDFYSI EKGDWMYKDT  1020
VFLEFPNGES NCGSNVEGKE QVPIVHVRCM PKDSNDGMEV D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	2e-14	65	169	8	112	PCF11 protein
1sz9_B	2e-14	65	169	8	112	PCF11 protein
1sz9_C	2e-14	65	169	8	112	PCF11 protein
1sza_A	2e-14	65	169	8	112	PCF11 protein
1sza_B	2e-14	65	169	8	112	PCF11 protein
1sza_C	2e-14	65	169	8	112	PCF11 protein
2bf0_X	2e-14	65	169	13	117	PCF11
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.15915	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2KG218200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801398.1	0.0	uncharacterized protein LOC112880881
TrEMBL	A0A2T7EP41	0.0	A0A2T7EP41_9POAL; Uncharacterized protein
STRING	Pavir.Bb01710.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7261	7	8

Link Out ? help Back to Top
Phytozome	Pavir.2KG218200.1.p