 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2KG206100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
C3H |
| Protein Properties |
Length: 408aa MW: 45029.9 Da PI: 8.7112 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG206100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 33.5 | 7.2e-11 | 21 | 44 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C++++rtG C++G +CkF+H+
Pavir.2KG206100.1.p 21 EPDCSYYMRTGMCRFGMTCKFNHP 44
789********************8 PP
|
| 2 | zf-CCCH | 35.2 | 2.2e-11 | 65 | 90 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++t tCk+G++CkF+H++
Pavir.2KG206100.1.p 65 GQPECQYYLKTSTCKFGATCKFHHPR 90
5799********************96 PP
|
| 3 | zf-CCCH | 36.7 | 6.8e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C +++rtG+Ck+G++CkF+H++
Pavir.2KG206100.1.p 112 EKECAYYLRTGQCKFGSTCKFHHPQ 136
679********************97 PP
|
| 4 | zf-CCCH | 39 | 1.3e-12 | 273 | 298 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+f+++tG+Ck+G CkF+H++
Pavir.2KG206100.1.p 273 DQPECQFYMKTGECKFGVVCKFHHPR 298
689*********************96 PP
|
| 5 | zf-CCCH | 37.5 | 3.9e-12 | 318 | 343 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+f++r+G Ck+G++CkF H+
Pavir.2KG206100.1.p 318 PGEPICSFYSRYGMCKFGPNCKFDHP 343
5799*********************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.253 | 18 | 46 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-4 | 18 | 45 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-7 | 21 | 44 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 23 | 46 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 24 | 45 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.9E-5 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.577 | 63 | 91 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.6E-9 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.59E-6 | 67 | 92 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.3E-5 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.2E-6 | 109 | 138 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.582 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-9 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.23 | 271 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.9E-5 | 271 | 298 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-9 | 273 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-5 | 274 | 300 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.27E-6 | 316 | 343 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.7E-7 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.46 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-8 | 319 | 343 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 322 | 342 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MWQMNLGEAV ELGPYPERVG EPDCSYYMRT GMCRFGMTCK FNHPADRKLA VAAARMKGEY 60
PQRNGQPECQ YYLKTSTCKF GATCKFHHPR EKAAMATRVQ LNELGYPFRP SEKECAYYLR 120
TGQCKFGSTC KFHHPQPSTM MVAVRGSGYS PGQSATSPGQ HAYQGAVTSW PLSRSTSFIA 180
SPRWPGHSSY AQVLVPPGLV QVPGWNPYTA QIGSSSSEDQ QQTPGAAQYY TGSRQSGTPC 240
IGDQGMFSSY QAGSVPVGLY AVQRENVFPE RPDQPECQFY MKTGECKFGV VCKFHHPRER 300
IIPAPNCALS SLGLPLRPGE PICSFYSRYG MCKFGPNCKF DHPIGTVMYG HVSSPTSEVP 360
TSRRMLAYVP SHPEVLPDNG SGRSRRITHS DSQQIPSGER STEREAS*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT034178 | 0.0 | BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds. |
| GenBank | BT060843 | 0.0 | BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds. |
| GenBank | BT064219 | 0.0 | BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds. |
| GenBank | BT085745 | 0.0 | BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds. |
| GenBank | EU956984 | 0.0 | EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds. |
