 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.2KG190900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 296aa MW: 31950.1 Da PI: 6.801 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.2KG190900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 75.5 | 7.3e-24 | 46 | 90 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45
++rlrWt+eLHerFveav+qLGG+++AtPk +l++m+v+gLt++h
Pavir.2KG190900.1.p 46 RQRLRWTNELHERFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYH 90
58******************************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MYSSKPEASF GSTHTNSVAN QQQMELAGNN MGPSNGANNN NNLAARQRLR WTNELHERFV 60
EAVTQLGGPD RATPKGVLRI MGVPGLTIYH KYRLAKYIPD ASADGNKADN KDPGDLLAGL 120
EGSSGLPISE ALKLQMEVQK RLHEQLEGKY LQKIIEEQQR LTGVKSETPA AGASVTVSSD 180
QFPDSERTEP STPAPTSKSP TKVVTSNRDT GERTEATKST CRGDSLSRHE PLTPDSNCQN 240
GSPPASPNHE RAAKRQRGSG NDFLDAQADF SLPRNIFESS SGSEFQPYSM SYSGN*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4r_A | 2e-17 | 46 | 97 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 2e-17 | 46 | 97 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 2e-17 | 46 | 97 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 2e-17 | 46 | 97 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT033205 | 2e-71 | BT033205.1 Zea mays full-length cDNA clone ZM_BFb0066I21 mRNA, complete cds. |
| GenBank | BT039899 | 2e-71 | BT039899.1 Zea mays full-length cDNA clone ZM_BFc0050C09 mRNA, complete cds. |
| GenBank | BT041154 | 2e-71 | BT041154.1 Zea mays full-length cDNA clone ZM_BFc0181P18 mRNA, complete cds. |
| GenBank | BT085891 | 2e-71 | BT085891.1 Zea mays full-length cDNA clone ZM_BFc0076P02 mRNA, complete cds. |
| GenBank | BT086335 | 2e-71 | BT086335.1 Zea mays full-length cDNA clone ZM_BFc0154D10 mRNA, complete cds. |
| GenBank | EU976446 | 2e-71 | EU976446.1 Zea mays clone 894637 MYB-CC type transfactor mRNA, complete cds. |
| GenBank | JX469900 | 2e-71 | JX469900.1 Zea mays subsp. mays clone UT3140 G2-like transcription factor mRNA, partial cds. |
