PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG017100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 277aa    MW: 30459.3 Da    PI: 8.0899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146284123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Pavir.2KG017100.1.p 62 YTCTFCRREFRSAQALGGHMNVH 84
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-65989No hitNo description
SMARTSM003550.00666284IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-56285IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQMAKYYWA RLGARTAAAA ATSSLRSWPP PAHAGEPSWE ELAFAQDAAG HLGGCVWPPR  60
SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LRQCASPDHE IIQDAQKQKS SIASPPADHQ  120
LQMQQQPAES PLFRPKQQAV LISGPKSTCC DHQSCNKEGA VISSTSPSFI STIINESKNK  180
VVISIPAAAT AGSKQALEID DDEEEEEEEI VAERRKRRRV VHQQPEALLP VFFLRSSKGV  240
EHDAKVPKVI TSPSPNSSVH LAGRQEVDLE LRLGIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135784229superman protein
2l1o_A3e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214218RKRRR
2215219KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.151230.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG017100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730836e-75EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803719.11e-118transcriptional regulator SUPERMAN-like
TrEMBLA0A1E5VNC01e-130A0A1E5VNC0_9POAL; Uncharacterized protein
STRINGPavir.J10005.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-28zinc-finger protein 10