PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG528900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 332aa    MW: 36374.2 Da    PI: 11.1372
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG528900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32163219158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Pavir.1NG528900.1.p 163 NEPIYVNPKQYHGILRRRQFRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 219
                          59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-38161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.459162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-28164219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-23165187IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-23196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSIKERRKWS DAVEGGQSQD QRKGRAGRWQ GAEAALLGGR TEGGAWEPCF SPLRLPPPLP  60
KCQLLLLKGV LWITTYGNSL RKTVIDNMRS TLSFENKQPL FASQAIDYGQ PIACISYPYN  120
DSGSGGVWAA YGSRTSSSTV FHPQIAGGGT SARIPLPLEL AENEPIYVNP KQYHGILRRR  180
QFRAKLEAQN KLVKARKPYL HESRHLHAMK RARGSGGRFL NTKQLQQQPR NASTRSTTNG  240
TASSSGSTHL RLGGGTARDQ TMLAPKAMPS QYNSKKAVSS APGFTVTPML HRDDTFFQHP  300
SHHLSFSGHF GQASAQAGMH NGTQQRVPVM R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20163224263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.343670.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG528900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.11e-174nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBLA0A3L6QJ951e-179A0A3L6QJ95_PANMI; Nuclear transcription factor Y subunit A-8-like
STRINGPavir.Aa00318.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.43e-40nuclear factor Y, subunit A8