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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG528000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 386aa MW: 42101.9 Da PI: 8.0921 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 3e-24 | 89 | 132 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRC +++++++k+CE+H+hrg++rsrk++e Pavir.1NG528000.1.p 89 DPEPGRCRRTDGKKWRCAKEAYPDSKYCEKHMHRGKNRSRKPVE 132 79***************************************998 PP | |||||||
2 | QLQ | 58.1 | 2.7e-20 | 18 | 52 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yK+La+++P+P++L+ +++ Pavir.1NG528000.1.p 18 PFTASQWQELEHQALIYKCLASGKPIPSYLMPPLR 52 9******************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-11 | 17 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.6E-14 | 18 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.814 | 18 | 53 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.829 | 89 | 133 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.6E-20 | 90 | 132 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MMMMSSRAGG GAGAGRYPFT ASQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDSALA 60 TSPSLAFPPQ PSLGWGCFGM GFGRKPDEDP EPGRCRRTDG KKWRCAKEAY PDSKYCEKHM 120 HRGKNRSRKP VEMSLATPAP SSNATSANSA TANATTTSSP APTYHRPAPA PAAAHDAAPY 180 HALYCGSPYV ASTRPGGAYH AAAQVSPFHL HLDTTHPHPP PSYYSVDQRD YAYGHAAAKE 240 VGEHAFFSDG TAERDRQAAG QWQFRNLGAE PKPSATSLFS VGGYGNGAAT VPYAVDRIKE 300 EDEEERRRQQ QHCFVLGADL RLERPSGHDA APEQKPLRPF FDEWPHEKSN KGGSWMGLDG 360 ETQLSMSIPM ATNDLPITSR YRNDE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7379 | 0.0 | callus| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG528000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970292 | 1e-179 | EU970292.1 Zea mays clone 343148 atGRF5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954097.1 | 0.0 | growth-regulating factor 1 isoform X1 | ||||
Swissprot | Q6AWY8 | 1e-167 | GRF1_ORYSJ; Growth-regulating factor 1 | ||||
TrEMBL | A0A2T7FCW6 | 0.0 | A0A2T7FCW6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03212.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5741 | 36 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-49 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG528000.1.p |