PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG526800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 268aa    MW: 28990.6 Da    PI: 11.4456
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG526800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1041.4e-32100156158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  Pavir.1NG526800.1.p 100 NEPIYVNPKQYHGILRRRQFRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 156
                          59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-3898159IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.45999159IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.5E-28101156IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23102124IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-23133156IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MLLPSSSSSS ASKGNSLRKT AIDNMRSTLS FDNKQPVFAS QGIDYGQPIA CISYPYNDSG  60
SGGVWAAYGS RASAATVFHP QIAGGGTSAR IPLPLELAEN EPIYVNPKQY HGILRRRQFR  120
AKLEAQNKLV KARKPYLHES RHLHAMKRAR GSGGRFLNTK QLQQQPRNAS TRSTTNGTSS  180
SGSTHLRLGG GTARDQTMLA PKAMPPQDNS KKAVSSAPGL TVTQMLRRDD TFFQHPSHHL  240
SFSGHFGQAS AQAGMHNGTQ HRVPVMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21100161263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.343670.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG526800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.10.0nuclear transcription factor Y subunit A-8-like isoform X1
TrEMBLA0A2T7FCV50.0A0A2T7FCV5_9POAL; Uncharacterized protein
STRINGPavir.Aa00318.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.43e-41nuclear factor Y, subunit A8