PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG506500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16387.5 Da PI: 7.5115 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.9e-19 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g Pavir.1NG506500.1.p 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56 69******9.**********8.....334**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-30 | 6 | 65 | No hit | No description |
SMART | SM00380 | 1.6E-38 | 7 | 70 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-21 | 7 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-11 | 7 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.061 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRAR 60 TNFPAGAAPA SFLSAALVEK LHRFNLASVQ AAQRQREAAA SAAAASAAMP AGGDAWAAEW 120 GGRFLEEQHV EQMIEELLDS NFSMEICC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 6 | 64 | 4 | 63 | ATERF1 |
3gcc_A | 5e-17 | 6 | 64 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG506500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968112 | 1e-146 | EU968112.1 Zea mays clone 314589 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797628.1 | 7e-83 | ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 1e-51 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A3L6QIA1 | 4e-82 | A0A3L6QIA1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa00196.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 3e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG506500.1.p |
Publications ? help Back to Top | |||
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