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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG485100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 703aa MW: 76663.4 Da PI: 6.379 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Pavir.1NG485100.1.p 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 72 688999***********************************************998 PP | |||||||
2 | START | 148.6 | 5.8e-47 | 215 | 440 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 +a +a++el+++a+a+e++W + e +n d++ ++f++ ++ ++e +r+sg+v+m + lv ++d++ +W+e ++ Pavir.1NG485100.1.p 215 MATRAMDELIRMAQAGEQLWARTGgpdgrEVLNVDTYDSIFSKPGSsfrgpdVHVEGSRDSGLVFMSAIGLVDMFMDSS-KWTEFFPaiv 303 5789*******************9999999999999999997766699*******************************.********** PP .EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 .kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 a t++v+ +g + l+lm+ el ++sp+vp R+ f+Ry+rq + g w+i+dvSvd + R+ +lpSg+li +++ng Pavir.1NG485100.1.p 304 sNARTIDVLVNGmagrsESLVLMYEELHVMSPVVPtRELCFLRYCRQIEHGLWAIADVSVDLQPRDARFGAPPRSCRLPSGCLIADMANG 393 *************************************************************7655554333457779************* PP EEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +skvtwveh+++++r+p h l+r + sg+a+ga +w+a+lqr ce+ Pavir.1NG485100.1.p 394 YSKVTWVEHMEVEDRVPiHLLYRDRILSGAAFGAHRWLAALQRACER 440 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-20 | 6 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 11 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.815 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-19 | 15 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-19 | 16 | 75 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 17 | 72 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.152 | 205 | 443 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.69E-31 | 206 | 441 | No hit | No description |
CDD | cd08875 | 1.39E-106 | 209 | 439 | No hit | No description |
SMART | SM00234 | 8.2E-37 | 214 | 440 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-39 | 215 | 440 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.19E-19 | 458 | 694 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MDFGDDVMDG SDGQHRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRMQLS RELGLEPRQI 60 KFWFQNRRTQ MKAQHERQDN CFLRAENDKI RCENIAMREA LRNVICPTCG GPPVADDYFD 120 EQKLRMENAR LKEELDRVSS LTSKYLGRPF TQLPPVQPLS MSSSLELSVG GLGSLALGPS 180 LDLDLLSGGS SGYHHPAFHL PTAVPEMERP MMAEMATRAM DELIRMAQAG EQLWARTGGP 240 DGREVLNVDT YDSIFSKPGS SFRGPDVHVE GSRDSGLVFM SAIGLVDMFM DSSKWTEFFP 300 AIVSNARTID VLVNGMAGRS ESLVLMYEEL HVMSPVVPTR ELCFLRYCRQ IEHGLWAIAD 360 VSVDLQPRDA RFGAPPRSCR LPSGCLIADM ANGYSKVTWV EHMEVEDRVP IHLLYRDRIL 420 SGAAFGAHRW LAALQRACER CACLATAGMP PRDIAGVTPE GNRSMMKLSQ RMVSGFCASL 480 SASQLHRWTT LSGPNDVGVR VMVHRSTDPG QPSGVVLSAA TSIWLPVPCD RVFAFICDEN 540 TRSQWDVLSH GNPVQEVSRI PNGSHPGNCI SLLRGLNASQ NSMLILQESC TDASGSLVVY 600 APIDIPAANV VMSGEDPSAI PLLPSGFTIL PDGRAGAAPS SSSAAGPLGG SPPAGSLVTV 660 AFQILVSSLP SSKLNAESVA TVNSLISTTV EQIKAALNCA SH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG485100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728523 | 0.0 | KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828617.1 | 0.0 | homeobox-leucine zipper protein ROC8-like | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A3L6RUM3 | 0.0 | A0A3L6RUM3_PANMI; Homeobox-leucine zipper protein ROC8-like | ||||
STRING | Si016483m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52170.1 | 1e-178 | homeodomain GLABROUS 7 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG485100.1.p |