PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG467300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YB
Protein Properties Length: 120aa    MW: 12508.5 Da    PI: 11.0954
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG467300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB67.42.7e-2162118763
                NF-YB   7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktin 63 
                           lP+an++r+m++v+P+  k+s  ak+++++c +ef++fv++eas+k+q+++r+ i+
  Pavir.1NG467300.1.p  62 GLPMANLVRLMRQVIPKGVKVSARAKHLTHDCTVEFVGFVAGEASEKAQAQHRRIIS 118
                          69****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-1460119IPR009072Histone-fold
PfamPF008081.4E-1262119IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.39E-1263119IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MDKALSSAVT TKLRKIERMG RKAKRGGAKK GVRDTEKTKV APADDCASPG GEGGSTASAA  60
AGLPMANLVR LMRQVIPKGV KVSARAKHLT HDCTVEFVGF VAGEASEKAQ AQHRRIISP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing kernels. {ECO:0000269|PubMed:11971906}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG467300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432571e-101AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822765.15e-62nuclear transcription factor Y subunit B-1-like
SwissprotQ6Z3484e-22NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBLA0A2T8KXK01e-60A0A2T8KXK0_9POAL; Uncharacterized protein
STRINGPavir.Aa00694.1.p3e-67(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136592631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.16e-14nuclear factor Y, subunit B4