PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG451300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 277aa MW: 29074.1 Da PI: 8.3338 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.8 | 6.4e-40 | 42 | 102 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s Pavir.1NG451300.1.p 42 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 102 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 40 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-33 | 43 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.227 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MMAAAPPVHI CMDSDWLKGI VPEEPGMGSS SPPADRRLRP QHDQPLKCPR CESTHTKFCY 60 YNNYSLSQPR YFCKTCRRYW TKGGSLRNVP VGGGCRKNKR ASAKKPAAPP MLQAHARQVA 120 ETGLHLSFSS MQQLPPPPAA ADPLCSLGLL DWKYDPILAG SGGAAGALDG ASSEAHFAGA 180 GMMGIPGGGE CHALSALRYA AGLGDHLQLQ GLPFGARAEH DAVEVKPAAA ERLLSLDWYG 240 EASRAPESAI SSLGALGLWS GMIGGAHQHH GSSAAI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7271 | 8e-53 | callus |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG451300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035326 | 0.0 | BT035326.1 Zea mays full-length cDNA clone ZM_BFb0055G17 mRNA, complete cds. | |||
GenBank | BT062957 | 0.0 | BT062957.1 Zea mays full-length cDNA clone ZM_BFc0012J21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953626.1 | 1e-175 | dof zinc finger protein 1 | ||||
TrEMBL | K3YUL6 | 1e-174 | K3YUL6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Aa00993.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 4e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG451300.1.p |