PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG451300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 277aa MW: 29074.1 Da PI: 8.3338

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG451300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.4e-40	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk++s Pavir.1NG451300.1.p 42 HDQPLKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRAS 102 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	40	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-33	43	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.227	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MMAAAPPVHI CMDSDWLKGI VPEEPGMGSS SPPADRRLRP QHDQPLKCPR CESTHTKFCY 60 YNNYSLSQPR YFCKTCRRYW TKGGSLRNVP VGGGCRKNKR ASAKKPAAPP MLQAHARQVA 120 ETGLHLSFSS MQQLPPPPAA ADPLCSLGLL DWKYDPILAG SGGAAGALDG ASSEAHFAGA 180 GMMGIPGGGE CHALSALRYA AGLGDHLQLQ GLPFGARAEH DAVEVKPAAA ERLLSLDWYG 240 EASRAPESAI SSLGALGLWS GMIGGAHQHH GSSAAI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7271	8e-53	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG451300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035326	0.0	BT035326.1 Zea mays full-length cDNA clone ZM_BFb0055G17 mRNA, complete cds.
GenBank	BT062957	0.0	BT062957.1 Zea mays full-length cDNA clone ZM_BFc0012J21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953626.1	1e-175	dof zinc finger protein 1
TrEMBL	K3YUL6	1e-174	K3YUL6_SETIT; Uncharacterized protein
STRING	Pavir.Aa00993.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG451300.1.p