PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG397700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 585aa    MW: 60614 Da    PI: 8.6282
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG397700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k F r  nL+ H r H
  Pavir.1NG397700.2.p  92 FVCEVCNKGFQREQNLQLHRRGH 114
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-791114No hitNo description
Gene3DG3DSA:3.30.160.608.1E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-4156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.3E-7164189No hitNo description
SMARTSM00355210169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HHQEQIKPLL AQPHQQLPPA PLLNAAASSS APGSAQAAAA  60
ASPPVKKKRT LPDPDAEVIA LSPKTLLATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKDPLQAQR RRVYLCPEPT CAHHDPARAL GDLTGVKKHF CRKHGEKKWK CDKCAKRYAV  180
QSDWKAHSKV CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQETARLPPP GLTASHLYGA  240
TSAANMALSL SQVGSHLAST LGGDAHAHHQ DLLRLGGAGA ANRFDHLLGP SSASAFRPLP  300
PPPSSAFLMG APQEFVDGDG TGSHAFLPGK AFQGLMHLPD LQGNGAGGPL ASSAPGLFNL  360
GYIANSANSS GTSSHGHASQ GHLTSDQFSE GGGGGGGGGG SETSAAMLFS GGGGFAGGDH  420
QVAPGGMYND QAVMLQQMSA TALLQKTSQM GSNNSSAHGG ASVFGGLVGS SVPSAAHGRA  480
PMLDQSQMHL QSLMNSLAGG GMFGGANSGS MIDPRMYDMD QDVKFSQGHA GAEMTRDFLG  540
VGGGGVMRGM PVAKGEHHDG AGDISSLEAE MKSASSSFTG RRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34165227365Zinc finger protein JACKDAW
5b3h_F3e-34165227365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.45241e-162callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG397700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542580.0BT054258.1 Zea mays full-length cDNA clone ZM_BFb0200O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGSb04g032140.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein